Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) (Yeast) (Yamadazyma tenuis)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Yamadazyma; Yamadazyma tenuis

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6051 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G3AZX4|G3AZX4_CANTC GYF domain-containing protein OS=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) OX=590646 GN=CANTEDRAFT_92490 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.8FAAAIALLASVCAVQAADD20 pKa = 3.86SEE22 pKa = 4.79DD23 pKa = 3.61VAFLTNLVQDD33 pKa = 4.54YY34 pKa = 10.44KK35 pKa = 11.61SHH37 pKa = 5.84TADD40 pKa = 3.06YY41 pKa = 11.12AKK43 pKa = 10.53FIRR46 pKa = 11.84TASSVPAVITSLALHH61 pKa = 6.21VATYY65 pKa = 10.47TDD67 pKa = 3.21TSYY70 pKa = 7.64TTLLDD75 pKa = 3.94NNGLDD80 pKa = 3.61IDD82 pKa = 4.22SLEE85 pKa = 4.5DD86 pKa = 3.66FATEE90 pKa = 4.09LPWYY94 pKa = 10.14SSRR97 pKa = 11.84LLVADD102 pKa = 4.67ADD104 pKa = 3.95ASEE107 pKa = 4.93SGDD110 pKa = 3.63ASEE113 pKa = 5.07TDD115 pKa = 3.35ASDD118 pKa = 3.56ASSTEE123 pKa = 3.92ASSSAASSAASSAASSSAASSSEE146 pKa = 3.7AGAAAMMAPIGALLGAAAIALMM168 pKa = 4.57

Molecular weight: 16.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G3BAR6|G3BAR6_CANTC MFS general substrate transporter OS=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) OX=590646 GN=CANTEDRAFT_131515 PE=4 SV=1
MM1 pKa = 7.72AGLSTVVASLNRR13 pKa = 11.84KK14 pKa = 8.54VVTSSSRR21 pKa = 11.84PTVLRR26 pKa = 11.84NMAGLSTSVTLGVVGLTVSGKK47 pKa = 7.11MVRR50 pKa = 11.84TSTLVTGGRR59 pKa = 11.84RR60 pKa = 11.84LEE62 pKa = 4.14LRR64 pKa = 11.84SSRR67 pKa = 11.84SRR69 pKa = 11.84RR70 pKa = 11.84WLFSSRR76 pKa = 11.84SIAVLRR82 pKa = 11.84YY83 pKa = 8.35VAKK86 pKa = 9.34LTTIVTLGTLFLSWTVRR103 pKa = 11.84LNMSHH108 pKa = 6.75ITTQVTLFMGGQFWFLTFF126 pKa = 4.14

Molecular weight: 13.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5540

511

6051

2636551

51

4087

435.7

49.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.588 ± 0.032

1.163 ± 0.011

5.977 ± 0.023

6.218 ± 0.026

4.794 ± 0.021

5.397 ± 0.03

2.205 ± 0.014

6.563 ± 0.024

6.915 ± 0.025

9.707 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.032 ± 0.01

5.678 ± 0.03

4.439 ± 0.025

3.769 ± 0.017

4.134 ± 0.019

8.874 ± 0.032

5.542 ± 0.019

6.303 ± 0.024

1.075 ± 0.01

3.629 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski