Oleiagrimonas soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Oleiagrimonas

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2676 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A099CZG3|A0A099CZG3_9GAMM 50S ribosomal protein L34 OS=Oleiagrimonas soli OX=1543381 GN=rpmH PE=3 SV=1
MM1 pKa = 7.71KK2 pKa = 10.57YY3 pKa = 10.61SLLAAALALGLSGVANADD21 pKa = 3.69QNSGPDD27 pKa = 3.4GTITINGKK35 pKa = 10.11VIAQTCQVDD44 pKa = 3.95GNGLGTADD52 pKa = 3.38NKK54 pKa = 10.17VVNLPDD60 pKa = 3.47VLTTALASTGDD71 pKa = 3.74TAGDD75 pKa = 3.38TSFQISVTGCDD86 pKa = 3.28ASLSTVQAYY95 pKa = 9.46FSGGDD100 pKa = 3.49VNSGNGRR107 pKa = 11.84LDD109 pKa = 3.29NSATGAAGNVQVQLLNGSDD128 pKa = 3.53NPMDD132 pKa = 4.75LSGADD137 pKa = 3.66ASAQSSQQVALSGGAATLSYY157 pKa = 9.95KK158 pKa = 10.16ARR160 pKa = 11.84YY161 pKa = 7.82YY162 pKa = 10.38ATGASSAGAVKK173 pKa = 9.53STVDD177 pKa = 3.63FTLIYY182 pKa = 10.2QQ183 pKa = 4.1

Molecular weight: 18.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A099CUS4|A0A099CUS4_9GAMM Replication-associated recombination protein A OS=Oleiagrimonas soli OX=1543381 GN=LF63_0108710 PE=3 SV=1
MM1 pKa = 7.45LNSLAAGRR9 pKa = 11.84RR10 pKa = 11.84LALRR14 pKa = 11.84LVLWQLGVAAMAGFIFLIQGRR35 pKa = 11.84RR36 pKa = 11.84AALAALASALAVALGNALAGARR58 pKa = 11.84AFSPGGAGQALARR71 pKa = 11.84LILGTLLKK79 pKa = 9.69WAVVFTGLYY88 pKa = 9.28VILVRR93 pKa = 11.84WQLPPAPAIAGLILAVLVNLFALRR117 pKa = 11.84FKK119 pKa = 10.83QQ120 pKa = 3.78

Molecular weight: 12.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2676

0

2676

872925

32

5770

326.2

35.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.283 ± 0.064

0.875 ± 0.016

6.196 ± 0.039

5.112 ± 0.061

3.453 ± 0.031

8.294 ± 0.064

2.722 ± 0.025

4.26 ± 0.03

2.971 ± 0.041

10.771 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.435 ± 0.021

2.518 ± 0.036

5.075 ± 0.04

3.75 ± 0.031

7.608 ± 0.075

5.22 ± 0.057

5.082 ± 0.046

7.396 ± 0.049

1.526 ± 0.025

2.453 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski