Vulcaniibacterium tengchongense

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Vulcaniibacterium

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3153 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N4VIU4|A0A3N4VIU4_9GAMM Peptidyl-prolyl cis-trans isomerase OS=Vulcaniibacterium tengchongense OX=1273429 GN=EDC50_2270 PE=3 SV=1
MM1 pKa = 7.49PFVVTEE7 pKa = 3.85NCIKK11 pKa = 10.53CKK13 pKa = 10.0YY14 pKa = 7.43TDD16 pKa = 3.85CVEE19 pKa = 4.15VCPVDD24 pKa = 4.28CFHH27 pKa = 7.43EE28 pKa = 5.34GPNFLVIDD36 pKa = 4.26PDD38 pKa = 3.64EE39 pKa = 6.0CIDD42 pKa = 3.79CTLCEE47 pKa = 4.4PEE49 pKa = 4.54CPINAIYY56 pKa = 10.45PEE58 pKa = 4.82DD59 pKa = 4.37DD60 pKa = 3.53VPAGQEE66 pKa = 3.7AFVALNAEE74 pKa = 4.56LAKK77 pKa = 10.17AWPVITARR85 pKa = 11.84KK86 pKa = 9.92DD87 pKa = 3.42PLPDD91 pKa = 3.51AKK93 pKa = 10.36EE94 pKa = 4.11WEE96 pKa = 4.46GKK98 pKa = 9.09PGKK101 pKa = 10.15LDD103 pKa = 3.58LLEE106 pKa = 4.23RR107 pKa = 4.71

Molecular weight: 11.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N4V4L9|A0A3N4V4L9_9GAMM Nucleoside-diphosphate-sugar epimerase OS=Vulcaniibacterium tengchongense OX=1273429 GN=EDC50_3103 PE=4 SV=1
MM1 pKa = 5.87QTAVVVIAVLALGLFLFVRR20 pKa = 11.84SRR22 pKa = 11.84RR23 pKa = 11.84KK24 pKa = 9.73RR25 pKa = 11.84SAAGGGGAGSAGSGGGVNPRR45 pKa = 11.84PPQRR49 pKa = 11.84PRR51 pKa = 2.95

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3153

0

3153

1042108

26

3648

330.5

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.77 ± 0.075

0.797 ± 0.014

5.661 ± 0.032

5.712 ± 0.046

3.252 ± 0.027

8.992 ± 0.052

2.123 ± 0.024

3.592 ± 0.029

2.366 ± 0.035

10.93 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.823 ± 0.015

2.153 ± 0.033

5.848 ± 0.046

3.335 ± 0.029

8.923 ± 0.065

4.337 ± 0.036

4.254 ± 0.041

7.201 ± 0.033

1.563 ± 0.02

2.365 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski