Trichuris suis (pig whipworm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichuridae; Trichuris

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3288 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B1PI24|A0A0B1PI24_9BILA Metalloendopeptidase OS=Trichuris suis OX=68888 GN=D918_08099 PE=4 SV=1
MM1 pKa = 7.79YY2 pKa = 10.42EE3 pKa = 4.32EE4 pKa = 4.32YY5 pKa = 11.15NKK7 pKa = 10.13FYY9 pKa = 11.02EE10 pKa = 4.25LFEE13 pKa = 4.49PVLSFFADD21 pKa = 3.28EE22 pKa = 5.06DD23 pKa = 3.89VTLRR27 pKa = 11.84DD28 pKa = 3.28ILEE31 pKa = 4.13LRR33 pKa = 11.84EE34 pKa = 3.68ADD36 pKa = 3.03IAYY39 pKa = 8.33WADD42 pKa = 3.24LCEE45 pKa = 4.61KK46 pKa = 9.95FNVMNLQLQVGNLNN60 pKa = 3.5

Molecular weight: 7.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A085N6M9|A0A085N6M9_9BILA Uncharacterized protein OS=Trichuris suis OX=68888 GN=D918_07103 PE=4 SV=1
MM1 pKa = 6.86NAAWMSVRR9 pKa = 11.84SIVVIQTRR17 pKa = 11.84IRR19 pKa = 11.84GGTGRR24 pKa = 11.84GKK26 pKa = 10.62APGRR30 pKa = 11.84GRR32 pKa = 11.84GPGRR36 pKa = 11.84GRR38 pKa = 11.84GRR40 pKa = 11.84GPGRR44 pKa = 11.84GRR46 pKa = 11.84GSGPGRR52 pKa = 11.84GGGSGPGRR60 pKa = 11.84GRR62 pKa = 11.84GSGPGRR68 pKa = 11.84GTGSGGGSGFRR79 pKa = 11.84MGPRR83 pKa = 11.84RR84 pKa = 11.84LPGPVAWGVCLFF96 pKa = 4.25

Molecular weight: 9.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3288

0

3288

1291231

26

6770

392.7

44.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.045 ± 0.034

2.696 ± 0.044

5.216 ± 0.028

6.31 ± 0.042

4.295 ± 0.03

5.571 ± 0.055

2.361 ± 0.018

4.876 ± 0.029

5.603 ± 0.038

9.66 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.407 ± 0.016

4.219 ± 0.023

4.822 ± 0.045

4.023 ± 0.027

6.263 ± 0.038

8.303 ± 0.055

5.229 ± 0.029

6.784 ± 0.035

1.253 ± 0.015

3.064 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski