Devosia sp. YR412

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3685 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H8ZY17|A0A1H8ZY17_9RHIZ Iron complex transport system ATP-binding protein OS=Devosia sp. YR412 OX=1881030 GN=SAMN05428969_0494 PE=3 SV=1
MM1 pKa = 7.94LDD3 pKa = 3.53GLTLGEE9 pKa = 3.55IHH11 pKa = 6.33MRR13 pKa = 11.84LVLVIALLLSTAPAFAADD31 pKa = 3.38AVIYY35 pKa = 10.56KK36 pKa = 8.49GTLGGKK42 pKa = 9.97DD43 pKa = 2.86IVVEE47 pKa = 4.12LTDD50 pKa = 3.92PSADD54 pKa = 3.27QVVGRR59 pKa = 11.84YY60 pKa = 9.31SYY62 pKa = 11.2LSQGGDD68 pKa = 3.08IPLSSVDD75 pKa = 3.28TSEE78 pKa = 4.83GVVTLAEE85 pKa = 4.15EE86 pKa = 4.71APCTEE91 pKa = 4.37TTCVFDD97 pKa = 4.65DD98 pKa = 3.76NYY100 pKa = 10.8EE101 pKa = 4.06IVEE104 pKa = 4.33VPIGAHH110 pKa = 3.88WQLRR114 pKa = 11.84VKK116 pKa = 10.72DD117 pKa = 4.44DD118 pKa = 3.71GSITGGWNPADD129 pKa = 3.58GSAVLDD135 pKa = 3.58IEE137 pKa = 4.29LTEE140 pKa = 4.12VARR143 pKa = 11.84RR144 pKa = 11.84TLPEE148 pKa = 4.54DD149 pKa = 3.5MAITPADD156 pKa = 3.84LADD159 pKa = 4.1SAWVASYY166 pKa = 11.08DD167 pKa = 3.57NPAAFSRR174 pKa = 11.84DD175 pKa = 3.13SAPYY179 pKa = 10.36DD180 pKa = 3.53FAKK183 pKa = 10.09MDD185 pKa = 3.46VALTEE190 pKa = 4.58GPTRR194 pKa = 11.84TMDD197 pKa = 3.34GNSYY201 pKa = 10.76RR202 pKa = 11.84DD203 pKa = 3.68VIDD206 pKa = 4.23PRR208 pKa = 11.84SKK210 pKa = 10.23FPFPRR215 pKa = 11.84VVAFADD221 pKa = 4.57GSPVEE226 pKa = 4.18AANTRR231 pKa = 11.84LAARR235 pKa = 11.84HH236 pKa = 5.26AQINMSAFACLSKK249 pKa = 10.76AYY251 pKa = 10.18AGLGYY256 pKa = 9.7RR257 pKa = 11.84DD258 pKa = 3.46GMGGGGLGDD267 pKa = 4.04FDD269 pKa = 4.76GEE271 pKa = 4.59SIEE274 pKa = 4.33IAYY277 pKa = 9.82LSPTVINWTEE287 pKa = 3.93TGSTYY292 pKa = 10.73CGGAYY297 pKa = 9.43PNNHH301 pKa = 6.43FDD303 pKa = 4.53SYY305 pKa = 11.1IIDD308 pKa = 3.72ARR310 pKa = 11.84TGADD314 pKa = 3.84FALGWVLKK322 pKa = 10.48DD323 pKa = 3.85WIATADD329 pKa = 3.52TTNYY333 pKa = 10.52EE334 pKa = 4.15PVTDD338 pKa = 3.69QAAALEE344 pKa = 4.38NPNGYY349 pKa = 9.69LFAPGQPLIDD359 pKa = 3.7YY360 pKa = 10.15ALAYY364 pKa = 10.34LDD366 pKa = 4.43EE367 pKa = 6.24AGLDD371 pKa = 3.4PDD373 pKa = 5.18LASEE377 pKa = 4.39CQLPDD382 pKa = 4.89LIAEE386 pKa = 4.51GNLGFRR392 pKa = 11.84FAPEE396 pKa = 3.79NKK398 pKa = 9.76LVFAITGLAHH408 pKa = 7.27ANFACSEE415 pKa = 4.17DD416 pKa = 3.83VLTVSLSDD424 pKa = 3.49IPEE427 pKa = 4.35LLALTASDD435 pKa = 4.48YY436 pKa = 11.27FPDD439 pKa = 4.14LANN442 pKa = 3.68

Molecular weight: 47.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9CDL2|A0A1H9CDL2_9RHIZ Transcriptional regulator HxlR family OS=Devosia sp. YR412 OX=1881030 GN=SAMN05428969_1445 PE=4 SV=1
MM1 pKa = 7.67PALILGLAVLLVVTMSVAVGAGAVPIPVDD30 pKa = 3.75TVWRR34 pKa = 11.84IIASKK39 pKa = 9.89LAPGSVVADD48 pKa = 3.43WTSGRR53 pKa = 11.84EE54 pKa = 3.93NIVWEE59 pKa = 4.15VRR61 pKa = 11.84LPRR64 pKa = 11.84IVLGAIVGASLAVVGAALQSVTRR87 pKa = 11.84NPLADD92 pKa = 3.56PHH94 pKa = 7.59LLGISSGAAFGAILVLLHH112 pKa = 6.37TGMFLGLITVPLFAFIGALIATALVLAVSNLTKK145 pKa = 10.48SQSAGRR151 pKa = 11.84LVLAGVAVSFIITAAGNLFIFLGDD175 pKa = 3.23PRR177 pKa = 11.84AAHH180 pKa = 5.55TVVFWMLGGLGLAQWQQLPFPLAALVLCGGYY211 pKa = 10.48LILKK215 pKa = 9.56ARR217 pKa = 11.84SLNAMTLGDD226 pKa = 4.11EE227 pKa = 4.45SATTLGIPALRR238 pKa = 11.84FRR240 pKa = 11.84LTVFVICALLTGSAVAFSGVIAFVGLMIPHH270 pKa = 7.6IVRR273 pKa = 11.84MMVGGDD279 pKa = 3.5YY280 pKa = 10.81RR281 pKa = 11.84RR282 pKa = 11.84VLPLSALVGAIFLVLADD299 pKa = 3.81IAARR303 pKa = 11.84TLMPPQDD310 pKa = 3.76MPIGVLTGIIGGLFFVGLMRR330 pKa = 11.84WRR332 pKa = 11.84KK333 pKa = 9.87SGEE336 pKa = 3.7

Molecular weight: 34.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3685

0

3685

1143512

29

3895

310.3

33.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.346 ± 0.058

0.627 ± 0.01

5.772 ± 0.032

5.517 ± 0.034

3.805 ± 0.027

8.47 ± 0.039

1.952 ± 0.019

5.52 ± 0.026

3.288 ± 0.034

10.323 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.568 ± 0.022

2.862 ± 0.027

4.942 ± 0.029

3.327 ± 0.026

6.122 ± 0.038

5.566 ± 0.03

5.708 ± 0.045

7.695 ± 0.033

1.303 ± 0.019

2.286 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski