Corynebacterium sp. LMM-1652

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2031 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6Z715|A0A5J6Z715_9CORY Mrr_cat domain-containing protein OS=Corynebacterium sp. LMM-1652 OX=2487892 GN=CUROG_00295 PE=4 SV=1
MM1 pKa = 7.04NRR3 pKa = 11.84AAIAAAALALALAGCSATDD22 pKa = 3.95PEE24 pKa = 4.45PTADD28 pKa = 3.43GTVSQNTFLTTHH40 pKa = 6.82GLAAMDD46 pKa = 3.5AVEE49 pKa = 5.81IIDD52 pKa = 3.65HH53 pKa = 7.28LDD55 pKa = 3.38RR56 pKa = 11.84QKK58 pKa = 9.9VTEE61 pKa = 4.56RR62 pKa = 11.84PTDD65 pKa = 4.58LIASVRR71 pKa = 11.84ADD73 pKa = 3.78EE74 pKa = 5.15LLLSSDD80 pKa = 3.72DD81 pKa = 3.78QEE83 pKa = 4.76VVVDD87 pKa = 4.99LPDD90 pKa = 3.5NQTYY94 pKa = 10.58VSIAPYY100 pKa = 8.84LTSTHH105 pKa = 6.73DD106 pKa = 3.63CFYY109 pKa = 11.19HH110 pKa = 7.34SLTTCLGEE118 pKa = 5.12LDD120 pKa = 4.42NEE122 pKa = 4.93DD123 pKa = 3.46IQVTITDD130 pKa = 3.75EE131 pKa = 4.08ATGEE135 pKa = 4.27VLVDD139 pKa = 3.43EE140 pKa = 4.91ATTTFDD146 pKa = 3.45NGFIGFWLPDD156 pKa = 3.74DD157 pKa = 3.7VTGLIEE163 pKa = 3.76VSYY166 pKa = 10.43QGRR169 pKa = 11.84TGTTEE174 pKa = 4.16FSTADD179 pKa = 3.59DD180 pKa = 4.31GATCVTDD187 pKa = 3.36LHH189 pKa = 6.16LTT191 pKa = 3.66

Molecular weight: 20.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6Z395|A0A5J6Z395_9CORY Nitric oxide dioxygenase OS=Corynebacterium sp. LMM-1652 OX=2487892 GN=hmp PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.97GFRR22 pKa = 11.84TRR24 pKa = 11.84MSTRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.22GRR42 pKa = 11.84KK43 pKa = 9.07SLTAA47 pKa = 4.07

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2031

0

2031

687179

29

1665

338.3

36.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.426 ± 0.067

0.703 ± 0.012

5.905 ± 0.046

6.674 ± 0.055

3.207 ± 0.031

8.595 ± 0.045

2.168 ± 0.027

4.842 ± 0.035

3.431 ± 0.046

9.253 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.353 ± 0.023

2.946 ± 0.031

5.023 ± 0.044

3.5 ± 0.031

6.254 ± 0.05

6.067 ± 0.041

5.972 ± 0.04

8.149 ± 0.045

1.403 ± 0.021

2.13 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski