Synechococcus sp. (strain CC9902)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2301 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q3AZM1|ATPA_SYNS9 ATP synthase subunit alpha OS=Synechococcus sp. (strain CC9902) OX=316279 GN=atpA PE=3 SV=1
MM1 pKa = 6.98TFEE4 pKa = 4.94VLFDD8 pKa = 5.26DD9 pKa = 5.44GNQSIPVEE17 pKa = 4.05RR18 pKa = 11.84FEE20 pKa = 4.44TLGDD24 pKa = 4.61AIACYY29 pKa = 10.16VSCIINANEE38 pKa = 3.62GMNAVEE44 pKa = 4.79IVDD47 pKa = 5.35DD48 pKa = 4.13YY49 pKa = 11.87FEE51 pKa = 5.16TIASHH56 pKa = 6.67SFADD60 pKa = 6.0FINEE64 pKa = 3.99KK65 pKa = 10.66QNN67 pKa = 3.23

Molecular weight: 7.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q3AV44|PNP_SYNS9 Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. (strain CC9902) OX=316279 GN=pnp PE=3 SV=1
MM1 pKa = 7.55TKK3 pKa = 9.01RR4 pKa = 11.84TLGGTSRR11 pKa = 11.84KK12 pKa = 9.07RR13 pKa = 11.84KK14 pKa = 8.17RR15 pKa = 11.84VSGFRR20 pKa = 11.84VRR22 pKa = 11.84MRR24 pKa = 11.84SHH26 pKa = 6.21TGRR29 pKa = 11.84RR30 pKa = 11.84VIRR33 pKa = 11.84TRR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.21RR38 pKa = 11.84GRR40 pKa = 11.84TRR42 pKa = 11.84LAVV45 pKa = 3.28

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2301

0

2301

664488

25

3504

288.8

31.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.753 ± 0.058

1.268 ± 0.018

5.537 ± 0.044

5.711 ± 0.051

3.236 ± 0.032

8.066 ± 0.058

2.18 ± 0.026

4.687 ± 0.05

3.116 ± 0.046

12.179 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.134 ± 0.021

3.02 ± 0.041

5.325 ± 0.046

4.74 ± 0.04

6.921 ± 0.052

6.608 ± 0.048

4.929 ± 0.038

6.974 ± 0.044

1.735 ± 0.029

1.88 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski