Lymantria dispar cypovirus 1 (isolate Rao) (LdCPV-1)
Average proteome isoelectric point is 6.13
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>sp|Q91IE0|RDRP_LDCPR RNA-directed RNA polymerase VP2 OS=Lymantria dispar cypovirus 1 (isolate Rao) OX=648169 GN=S2 PE=3 SV=1
MM1 pKa = 7.8 EE2 pKa = 5.25 INRR5 pKa = 11.84 AEE7 pKa = 3.92 IRR9 pKa = 11.84 RR10 pKa = 11.84 EE11 pKa = 3.4 ITRR14 pKa = 11.84 YY15 pKa = 10.16 AGLIEE20 pKa = 4.38 QQTQINITDD29 pKa = 3.6 NDD31 pKa = 3.28 QDD33 pKa = 3.6 ILKK36 pKa = 9.07 TLIADD41 pKa = 3.38 YY42 pKa = 10.11 NLRR45 pKa = 11.84 MRR47 pKa = 11.84 RR48 pKa = 11.84 DD49 pKa = 3.38 ALLGEE54 pKa = 4.63 LARR57 pKa = 11.84 LDD59 pKa = 3.87 EE60 pKa = 5.09 LRR62 pKa = 11.84 DD63 pKa = 3.31 ISQIKK68 pKa = 9.22 GDD70 pKa = 4.15 EE71 pKa = 4.21 YY72 pKa = 11.58 KK73 pKa = 10.23 LTIPLLPIISTLNQHH88 pKa = 5.82 EE89 pKa = 4.37 FEE91 pKa = 5.45 IIQANIEE98 pKa = 3.95 TDD100 pKa = 4.76 FIADD104 pKa = 3.29 NVTFITSFIPADD116 pKa = 3.9 LDD118 pKa = 3.76 LEE120 pKa = 4.3 QTIQHH125 pKa = 5.1 VFFRR129 pKa = 11.84 TTATTPYY136 pKa = 9.3 FRR138 pKa = 11.84 SFNLVIAILDD148 pKa = 3.69 YY149 pKa = 11.68 DD150 pKa = 4.12 EE151 pKa = 6.21 DD152 pKa = 4.54 KK153 pKa = 11.7 GDD155 pKa = 3.28 VKK157 pKa = 11.25 LDD159 pKa = 3.41 VKK161 pKa = 10.29 ITITRR166 pKa = 11.84 SNNGVFNYY174 pKa = 10.46 NYY176 pKa = 8.37 TWAGKK181 pKa = 9.9 DD182 pKa = 3.44 YY183 pKa = 10.43 EE184 pKa = 4.53 RR185 pKa = 11.84 VSICYY190 pKa = 10.26 NLISYY195 pKa = 7.52 LQQINGPRR203 pKa = 11.84 GRR205 pKa = 11.84 DD206 pKa = 3.52 DD207 pKa = 3.57 EE208 pKa = 6.21 AEE210 pKa = 3.99 MPIYY214 pKa = 10.31 EE215 pKa = 4.87 IVRR218 pKa = 11.84 QNNGSQPSYY227 pKa = 11.28 ASGEE231 pKa = 3.89 HH232 pKa = 6.21 LYY234 pKa = 10.25 IVSSHH239 pKa = 5.54 LHH241 pKa = 5.12 VDD243 pKa = 3.98 EE244 pKa = 4.28 IVRR247 pKa = 11.84 DD248 pKa = 3.84 RR249 pKa = 11.84 EE250 pKa = 4.07 HH251 pKa = 7.41 RR252 pKa = 11.84 DD253 pKa = 2.75 ISVDD257 pKa = 3.54 VTEE260 pKa = 5.09 LNLMFPIVRR269 pKa = 11.84 MFDD272 pKa = 3.47 PVDD275 pKa = 3.57 LRR277 pKa = 11.84 DD278 pKa = 3.54 IRR280 pKa = 11.84 IEE282 pKa = 3.99 DD283 pKa = 3.56 VTPGIEE289 pKa = 3.88 FTINMEE295 pKa = 3.67 VSTYY299 pKa = 8.92 LTEE302 pKa = 4.47 LSGSHH307 pKa = 6.81 VDD309 pKa = 3.56 TQRR312 pKa = 11.84 TIMNHH317 pKa = 4.95 AEE319 pKa = 4.24 KK320 pKa = 10.39 IVGNYY325 pKa = 7.86 TGQQWNVQSNMLSEE339 pKa = 4.28 VRR341 pKa = 11.84 TQKK344 pKa = 10.97 LEE346 pKa = 4.13 EE347 pKa = 4.2 EE348 pKa = 4.48 DD349 pKa = 3.46 EE350 pKa = 4.37 EE351 pKa = 4.13 ARR353 pKa = 11.84 QRR355 pKa = 11.84 GDD357 pKa = 3.31 YY358 pKa = 7.49 TTSTLVQTMAQVSDD372 pKa = 4.38 LFSSTILYY380 pKa = 10.0 RR381 pKa = 11.84 YY382 pKa = 10.3 AEE384 pKa = 4.57 AEE386 pKa = 3.88 LDD388 pKa = 3.67 NTVGAFEE395 pKa = 4.56 LLRR398 pKa = 11.84 PVMSIPTEE406 pKa = 4.17 YY407 pKa = 10.24 IHH409 pKa = 7.45 DD410 pKa = 3.89 GRR412 pKa = 11.84 IGPITNISASASIVTSSNNGVGEE435 pKa = 3.82 VRR437 pKa = 11.84 NIFKK441 pKa = 10.47 PIGDD445 pKa = 3.53 QTINEE450 pKa = 3.85 AHH452 pKa = 6.5 FANVYY457 pKa = 11.05 SNDD460 pKa = 2.94 EE461 pKa = 3.84 YY462 pKa = 11.44 AIYY465 pKa = 10.73 LRR467 pKa = 11.84 FSYY470 pKa = 10.17 RR471 pKa = 11.84 QAPVQSEE478 pKa = 4.27 TVYY481 pKa = 10.68 LQQALPSMRR490 pKa = 11.84 IVSPSSVSTTVSTALIGGNTIRR512 pKa = 11.84 INCPIRR518 pKa = 11.84 PHH520 pKa = 7.86 RR521 pKa = 11.84 EE522 pKa = 3.81 DD523 pKa = 3.49 NFVAGGVQIPRR534 pKa = 11.84 QSTAVEE540 pKa = 3.65 IHH542 pKa = 5.29 VQEE545 pKa = 3.89 ILIGYY550 pKa = 7.75 RR551 pKa = 11.84 QATTFPIDD559 pKa = 3.34 TEE561 pKa = 4.46 GRR563 pKa = 11.84 LSLEE567 pKa = 3.75 LMYY570 pKa = 11.09 GLEE573 pKa = 4.17 SRR575 pKa = 11.84 SAVGNTMSPVRR586 pKa = 11.84 FVTVNDD592 pKa = 4.14 GEE594 pKa = 4.67 FFGLTCPIDD603 pKa = 3.72 LTLSTIVDD611 pKa = 3.7 PASYY615 pKa = 10.61 LSDD618 pKa = 3.27 GVILVTTAFEE628 pKa = 4.37 DD629 pKa = 3.53 LRR631 pKa = 11.84 GYY633 pKa = 10.96 AWLATLGGDD642 pKa = 3.65 WPRR645 pKa = 11.84 TYY647 pKa = 10.57 NSSMGAFNIFTGGDD661 pKa = 3.17 INLSTEE667 pKa = 4.12 YY668 pKa = 10.32 GSEE671 pKa = 3.52 MTYY674 pKa = 9.04 TFKK677 pKa = 11.33 VEE679 pKa = 4.22 LPINYY684 pKa = 7.66 MFNNMTISSHH694 pKa = 4.72 NVPRR698 pKa = 11.84 VPVLGVTYY706 pKa = 10.82 ASIYY710 pKa = 9.37 QDD712 pKa = 2.74 SRR714 pKa = 11.84 TDD716 pKa = 3.34 LEE718 pKa = 4.03 ARR720 pKa = 11.84 RR721 pKa = 11.84 FLQTLVFRR729 pKa = 11.84 IHH731 pKa = 6.74 GSWSARR737 pKa = 11.84 VPYY740 pKa = 10.16 PPGNLPTRR748 pKa = 11.84 NTANQHH754 pKa = 4.71 QDD756 pKa = 2.53 IQQVINDD763 pKa = 4.73 SIFQEE768 pKa = 4.21 LDD770 pKa = 3.13 RR771 pKa = 11.84 LSDD774 pKa = 3.64 EE775 pKa = 5.56 LLDD778 pKa = 3.84 LEE780 pKa = 4.86 NRR782 pKa = 11.84 LDD784 pKa = 3.46 HH785 pKa = 7.34 LEE787 pKa = 4.05 RR788 pKa = 11.84 QFEE791 pKa = 4.23 MFIQSQEE798 pKa = 4.27 SEE800 pKa = 3.45 WWEE803 pKa = 3.49 ILLNVVIDD811 pKa = 3.36 ISIGYY816 pKa = 9.52 FSTFAGDD823 pKa = 3.63 ALKK826 pKa = 10.59 NAQRR830 pKa = 11.84 AITKK834 pKa = 9.92 AVGYY838 pKa = 6.45 TRR840 pKa = 11.84 RR841 pKa = 11.84 VLMTVTKK848 pKa = 9.57 TMRR851 pKa = 11.84 NGTIFTRR858 pKa = 11.84 LLGAKK863 pKa = 9.24 NLSGQALASLEE874 pKa = 4.2 TLVEE878 pKa = 4.07 SALRR882 pKa = 11.84 SINMKK887 pKa = 9.71 KK888 pKa = 10.1 SRR890 pKa = 11.84 FMRR893 pKa = 11.84 GAEE896 pKa = 3.93 PLYY899 pKa = 9.56 KK900 pKa = 9.53 TNKK903 pKa = 7.95 VAQHH907 pKa = 6.45 IDD909 pKa = 3.25 NTEE912 pKa = 3.93 KK913 pKa = 10.4 MNMMMDD919 pKa = 3.49 FSFANRR925 pKa = 11.84 NNRR928 pKa = 11.84 QNITADD934 pKa = 3.82 TLSKK938 pKa = 9.8 MHH940 pKa = 6.22 TQNAHH945 pKa = 5.01 GTSDD949 pKa = 3.83 TILPAMRR956 pKa = 11.84 VYY958 pKa = 10.47 YY959 pKa = 10.39 RR960 pKa = 11.84 PLGFLDD966 pKa = 3.67 KK967 pKa = 10.76 RR968 pKa = 11.84 VGDD971 pKa = 4.09 ALHH974 pKa = 6.36 TGITRR979 pKa = 11.84 PEE981 pKa = 3.84 ALKK984 pKa = 10.49 KK985 pKa = 9.73 QLRR988 pKa = 11.84 SDD990 pKa = 3.66 VANVGTRR997 pKa = 11.84 APSHH1001 pKa = 6.6 AFMTYY1006 pKa = 9.71 TDD1008 pKa = 3.94 VLYY1011 pKa = 10.46 EE1012 pKa = 4.15 DD1013 pKa = 3.98 AGSYY1017 pKa = 9.77 IVSKK1021 pKa = 10.3 RR1022 pKa = 11.84 YY1023 pKa = 10.23 LGIGEE1028 pKa = 4.33 LNKK1031 pKa = 10.33 FGRR1034 pKa = 11.84 TTSDD1038 pKa = 2.71 KK1039 pKa = 10.31 NAGIGGVNIKK1049 pKa = 10.52 YY1050 pKa = 9.9 RR1051 pKa = 11.84 VNKK1054 pKa = 8.24 ITADD1058 pKa = 3.03 GKK1060 pKa = 10.68 YY1061 pKa = 10.19 IIDD1064 pKa = 3.54 RR1065 pKa = 11.84 LDD1067 pKa = 3.55 YY1068 pKa = 10.73 TEE1070 pKa = 4.69 SGYY1073 pKa = 8.57 TALDD1077 pKa = 3.2 VDD1079 pKa = 4.52 RR1080 pKa = 11.84 LYY1082 pKa = 11.55 SSLFGKK1088 pKa = 10.28 QGDD1091 pKa = 4.18 GLSTEE1096 pKa = 4.43 QKK1098 pKa = 10.11 WMDD1101 pKa = 2.94 ISKK1104 pKa = 10.91 GVDD1107 pKa = 2.97 AKK1109 pKa = 10.74 IISADD1114 pKa = 3.47 MVSEE1118 pKa = 4.26 EE1119 pKa = 4.38 FLSSKK1124 pKa = 9.54 YY1125 pKa = 8.25 TGQMIDD1131 pKa = 3.87 EE1132 pKa = 5.93 LINSPPQFNYY1142 pKa = 10.36 SLVYY1146 pKa = 10.52 RR1147 pKa = 11.84 NCQDD1151 pKa = 2.99 FALDD1155 pKa = 3.65 VLRR1158 pKa = 11.84 VAQGFSPSNKK1168 pKa = 8.11 WDD1170 pKa = 3.19 VSTAARR1176 pKa = 11.84 MQQRR1180 pKa = 11.84 RR1181 pKa = 11.84 VISLMDD1187 pKa = 4.15 DD1188 pKa = 3.4 LMGEE1192 pKa = 4.29 SEE1194 pKa = 4.19 TFARR1198 pKa = 11.84 SGRR1201 pKa = 11.84 ASQLLLRR1208 pKa = 11.84 QVRR1211 pKa = 11.84 EE1212 pKa = 4.25 SYY1214 pKa = 10.64 VKK1216 pKa = 10.06 ARR1218 pKa = 11.84 KK1219 pKa = 9.85 RR1220 pKa = 11.84 GDD1222 pKa = 3.41 LQAVKK1227 pKa = 10.48 ALQLRR1232 pKa = 11.84 FKK1234 pKa = 11.33 GFFF1237 pKa = 3.29
Molecular weight: 140.11 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 5.189
IPC2_protein 5.219
IPC_protein 5.207
Toseland 5.219
ProMoST 5.385
Dawson 5.245
Bjellqvist 5.359
Wikipedia 5.13
Rodwell 5.156
Grimsley 5.169
Solomon 5.245
Lehninger 5.207
Nozaki 5.385
DTASelect 5.55
Thurlkill 5.245
EMBOSS 5.219
Sillero 5.461
Patrickios 4.113
IPC_peptide 5.245
IPC2_peptide 5.448
IPC2.peptide.svr19 5.423
Protein with the highest isoelectric point:
>sp|Q91ID7|NS1_LDCPR Non-structural protein 1 OS=Lymantria dispar cypovirus 1 (isolate Rao) OX=648169 GN=S5 PE=4 SV=1
MM1 pKa = 7.39 FAIDD5 pKa = 4.05 PLKK8 pKa = 10.53 HH9 pKa = 5.65 SKK11 pKa = 10.57 LYY13 pKa = 10.59 EE14 pKa = 4.03 EE15 pKa = 4.63 YY16 pKa = 10.94 GLYY19 pKa = 10.45 LRR21 pKa = 11.84 PHH23 pKa = 6.9 QINQEE28 pKa = 3.99 IKK30 pKa = 8.54 PTTIKK35 pKa = 10.54 KK36 pKa = 10.23 KK37 pKa = 10.17 EE38 pKa = 3.85 LAPTIRR44 pKa = 11.84 SIRR47 pKa = 11.84 YY48 pKa = 8.68 ASLLHH53 pKa = 7.24 SMLAKK58 pKa = 10.14 HH59 pKa = 6.53 AARR62 pKa = 11.84 HH63 pKa = 5.68 NGTLINPRR71 pKa = 11.84 MYY73 pKa = 11.37 ADD75 pKa = 5.11 MITLGNTKK83 pKa = 8.74 VTVTKK88 pKa = 8.63 GTPKK92 pKa = 10.7 AQIDD96 pKa = 3.92 TLKK99 pKa = 10.59 MNGLTVVSKK108 pKa = 10.56 SRR110 pKa = 11.84 RR111 pKa = 11.84 NNKK114 pKa = 9.1 KK115 pKa = 10.34 KK116 pKa = 10.17 PVSDD120 pKa = 3.6 TTATTDD126 pKa = 3.13 EE127 pKa = 4.27 NTNDD131 pKa = 2.75 IVTYY135 pKa = 10.27 KK136 pKa = 10.86 ALTEE140 pKa = 3.87 MSTLVEE146 pKa = 4.44 SFHH149 pKa = 6.77 LPSGLTLIVFDD160 pKa = 4.26 DD161 pKa = 4.14 EE162 pKa = 5.54 KK163 pKa = 10.49 YY164 pKa = 10.26 QSLIPDD170 pKa = 4.67 YY171 pKa = 10.49 INQLITYY178 pKa = 6.7 TQPHH182 pKa = 7.76 IIPTWQGIADD192 pKa = 4.33 FSDD195 pKa = 4.24 PYY197 pKa = 10.45 LRR199 pKa = 11.84 SYY201 pKa = 10.55 FRR203 pKa = 11.84 RR204 pKa = 11.84 PFEE207 pKa = 3.98 LTASNLASPQKK218 pKa = 10.69 HH219 pKa = 5.52 NLSPLTRR226 pKa = 11.84 SIFNNTGRR234 pKa = 11.84 EE235 pKa = 3.67 DD236 pKa = 4.54 AIIKK240 pKa = 9.84 KK241 pKa = 10.17 LYY243 pKa = 10.62 GYY245 pKa = 10.49 GEE247 pKa = 4.57 YY248 pKa = 10.27 IFIKK252 pKa = 10.95 YY253 pKa = 8.52 EE254 pKa = 3.93 GCLITWTGVYY264 pKa = 10.03 GAVAMMVNLPKK275 pKa = 9.92 RR276 pKa = 11.84 DD277 pKa = 3.76 LGLDD281 pKa = 3.29 AGDD284 pKa = 4.3 NFLKK288 pKa = 10.35 EE289 pKa = 4.2 YY290 pKa = 10.32 KK291 pKa = 9.94 QLLFYY296 pKa = 10.92 GVITDD301 pKa = 4.31 ATPSGISAKK310 pKa = 9.49 STVIKK315 pKa = 10.61 ISPHH319 pKa = 7.29 KK320 pKa = 10.05 MMNPSGGALAVLSKK334 pKa = 10.58 FLEE337 pKa = 4.46 AVVSANVINATLVVYY352 pKa = 10.51 AEE354 pKa = 4.34 KK355 pKa = 10.85 GAGKK359 pKa = 8.68 TSFLSTYY366 pKa = 10.83 AEE368 pKa = 4.07 RR369 pKa = 11.84 LSVASGQAVGHH380 pKa = 6.87 LSSDD384 pKa = 3.19 AYY386 pKa = 10.65 GRR388 pKa = 11.84 WLAKK392 pKa = 10.62 NKK394 pKa = 9.73 DD395 pKa = 3.49 VKK397 pKa = 10.78 EE398 pKa = 3.97 PSFEE402 pKa = 3.88 YY403 pKa = 10.43 DD404 pKa = 3.37 YY405 pKa = 11.71 VLSRR409 pKa = 11.84 DD410 pKa = 3.47 TDD412 pKa = 3.7 DD413 pKa = 3.54 TEE415 pKa = 4.58 SYY417 pKa = 9.97 YY418 pKa = 9.3 EE419 pKa = 3.89 QRR421 pKa = 11.84 ASEE424 pKa = 4.55 LLTLHH429 pKa = 7.08 GISEE433 pKa = 4.5 LAQYY437 pKa = 10.37 EE438 pKa = 4.3 LLSVRR443 pKa = 11.84 KK444 pKa = 8.78 KK445 pKa = 9.85 VKK447 pKa = 9.58 MMNEE451 pKa = 3.71 MNEE454 pKa = 3.77 ILIAQLEE461 pKa = 4.32 NADD464 pKa = 3.67 THH466 pKa = 6.13 SEE468 pKa = 4.04 RR469 pKa = 11.84 NFYY472 pKa = 11.58 YY473 pKa = 9.99 MVSTGKK479 pKa = 8.32 NTPRR483 pKa = 11.84 TLIVEE488 pKa = 4.11 GHH490 pKa = 6.37 FNAQDD495 pKa = 3.26 ATIARR500 pKa = 11.84 TDD502 pKa = 3.41 TTVLLRR508 pKa = 11.84 TINDD512 pKa = 3.35 TTQAMRR518 pKa = 11.84 DD519 pKa = 3.56 RR520 pKa = 11.84 QRR522 pKa = 11.84 SGVVQLFLRR531 pKa = 11.84 DD532 pKa = 3.14 TYY534 pKa = 11.62 YY535 pKa = 11.33 RR536 pKa = 11.84 LLPSLHH542 pKa = 4.97 TTVYY546 pKa = 8.82 PFEE549 pKa = 4.09 MLEE552 pKa = 4.54 SIKK555 pKa = 10.15 RR556 pKa = 11.84 WKK558 pKa = 8.44 WVHH561 pKa = 5.43
Molecular weight: 63.52 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 8.496
IPC2_protein 8.551
IPC_protein 8.448
Toseland 8.99
ProMoST 8.873
Dawson 9.341
Bjellqvist 9.077
Wikipedia 9.545
Rodwell 9.487
Grimsley 9.443
Solomon 9.385
Lehninger 9.326
Nozaki 9.004
DTASelect 9.063
Thurlkill 9.151
EMBOSS 9.443
Sillero 9.253
Patrickios 4.393
IPC_peptide 9.37
IPC2_peptide 7.629
IPC2.peptide.svr19 7.61
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
10
0
10
7701
248
1333
770.1
86.81
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
7.324 ± 0.478
0.727 ± 0.184
5.752 ± 0.252
5.61 ± 0.305
4.012 ± 0.249
4.869 ± 0.274
2.558 ± 0.195
6.739 ± 0.383
4.441 ± 0.575
8.752 ± 0.372
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.701 ± 0.172
5.506 ± 0.275
4.207 ± 0.3
3.818 ± 0.224
5.843 ± 0.316
7.869 ± 0.26
7.596 ± 0.415
6.584 ± 0.244
0.766 ± 0.077
4.324 ± 0.307
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here