Tamlana fucoidanivorans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3334 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C4SP99|A0A5C4SP99_9FLAO (2R 3S)-2-methylisocitrate dehydratase OS=Tamlana fucoidanivorans OX=2583814 GN=FGF67_04835 PE=4 SV=1
MM1 pKa = 7.47KK2 pKa = 10.24KK3 pKa = 9.74ILNICMMVITIIALNSCEE21 pKa = 4.35EE22 pKa = 4.21KK23 pKa = 10.23DD24 pKa = 3.4TSEE27 pKa = 5.74FIAQEE32 pKa = 3.85ATDD35 pKa = 4.16FTFSTSFLEE44 pKa = 5.21NYY46 pKa = 9.92LLNNSLGNNLAEE58 pKa = 4.13RR59 pKa = 11.84FTWRR63 pKa = 11.84DD64 pKa = 3.05ANFGIPTEE72 pKa = 4.16RR73 pKa = 11.84TYY75 pKa = 11.31EE76 pKa = 3.95LQAATMEE83 pKa = 4.68DD84 pKa = 3.62FSDD87 pKa = 3.92YY88 pKa = 11.44TNDD91 pKa = 4.48PDD93 pKa = 4.25DD94 pKa = 4.93SNYY97 pKa = 10.5KK98 pKa = 10.38AYY100 pKa = 11.06NLGTNIGGNEE110 pKa = 3.48IPATVKK116 pKa = 10.5QFLALAKK123 pKa = 10.22IAGLDD128 pKa = 3.72NDD130 pKa = 5.1PEE132 pKa = 4.53TPAPNTGKK140 pKa = 10.75LYY142 pKa = 10.33FRR144 pKa = 11.84VRR146 pKa = 11.84ATIGKK151 pKa = 9.68DD152 pKa = 3.05NLEE155 pKa = 4.24SFSAIQALNIEE166 pKa = 4.26LQEE169 pKa = 4.39GEE171 pKa = 4.55EE172 pKa = 4.25EE173 pKa = 4.38VGGPNCPSWWVVGAGAPDD191 pKa = 4.91AGWNWDD197 pKa = 3.46NPIEE201 pKa = 4.39FLCTDD206 pKa = 3.84QIYY209 pKa = 9.17TSNINLANDD218 pKa = 3.44SFRR221 pKa = 11.84FFTEE225 pKa = 3.29KK226 pKa = 11.07DD227 pKa = 3.12NWDD230 pKa = 3.48SGLNFPYY237 pKa = 10.21FVDD240 pKa = 3.24EE241 pKa = 5.55GYY243 pKa = 10.93SIDD246 pKa = 3.94PNFEE250 pKa = 3.63NAMDD254 pKa = 4.06GDD256 pKa = 4.07EE257 pKa = 4.2NFRR260 pKa = 11.84FIGTPGKK267 pKa = 10.7YY268 pKa = 9.95SLTIDD273 pKa = 4.22SVNKK277 pKa = 9.1TIKK280 pKa = 10.28LGPPAAEE287 pKa = 5.14DD288 pKa = 4.16PNCDD292 pKa = 3.75SVWVVGAGAVDD303 pKa = 5.03AGWNWDD309 pKa = 3.45SPIEE313 pKa = 4.12FFCTDD318 pKa = 2.9NVYY321 pKa = 9.3STNIKK326 pKa = 8.59LTNDD330 pKa = 2.84AFRR333 pKa = 11.84FFLEE337 pKa = 4.0EE338 pKa = 4.39GNWDD342 pKa = 3.38SGQNYY347 pKa = 8.66PFYY350 pKa = 11.24ANDD353 pKa = 4.49GYY355 pKa = 9.72TIDD358 pKa = 5.08SLLEE362 pKa = 4.09DD363 pKa = 4.72AQDD366 pKa = 3.5GDD368 pKa = 4.45NNFKK372 pKa = 11.15FNGTPGTYY380 pKa = 10.55LLTVDD385 pKa = 4.58TVNKK389 pKa = 9.4TITLGIPRR397 pKa = 11.84PEE399 pKa = 4.34EE400 pKa = 4.03PNCDD404 pKa = 3.93SVWVVGAGAVDD415 pKa = 5.03AGWNWDD421 pKa = 3.49SPIEE425 pKa = 4.14FTCTDD430 pKa = 3.32NVYY433 pKa = 10.48SASINLTNDD442 pKa = 2.6AFRR445 pKa = 11.84FFLEE449 pKa = 4.0EE450 pKa = 4.39GNWDD454 pKa = 3.38SGQNYY459 pKa = 8.63PFYY462 pKa = 11.07ADD464 pKa = 4.17DD465 pKa = 5.48GYY467 pKa = 9.64TIDD470 pKa = 4.64TLLEE474 pKa = 4.25DD475 pKa = 5.14AQDD478 pKa = 3.52GDD480 pKa = 4.45NNFKK484 pKa = 11.14FNGTPGIYY492 pKa = 10.04YY493 pKa = 7.49FTVDD497 pKa = 3.94TVNKK501 pKa = 10.23IIDD504 pKa = 3.56LRR506 pKa = 11.84QQ507 pKa = 3.01

Molecular weight: 56.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C4SJ00|A0A5C4SJ00_9FLAO RNA polymerase sigma factor OS=Tamlana fucoidanivorans OX=2583814 GN=FGF67_11925 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.09GRR40 pKa = 11.84KK41 pKa = 7.97KK42 pKa = 10.62LSVSSEE48 pKa = 4.03TRR50 pKa = 11.84HH51 pKa = 5.96KK52 pKa = 10.68KK53 pKa = 9.8

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3334

0

3334

1203641

24

4605

361.0

40.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.291 ± 0.038

0.803 ± 0.014

5.655 ± 0.031

6.311 ± 0.042

5.217 ± 0.035

6.469 ± 0.042

2.031 ± 0.022

7.749 ± 0.037

7.791 ± 0.048

9.124 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.148 ± 0.019

6.308 ± 0.043

3.498 ± 0.025

3.351 ± 0.021

3.435 ± 0.028

6.42 ± 0.033

5.711 ± 0.044

6.301 ± 0.033

1.188 ± 0.016

4.198 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski