Flammeovirga sp. MY04

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Flammeovirga; unclassified Flammeovirga

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5417 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B1G1I7|A0A1B1G1I7_9BACT Sulfatase-like hydrolase/transferase OS=Flammeovirga sp. MY04 OX=1191459 GN=MY04_4845 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 10.56LIARR6 pKa = 11.84LATLLLLSVCLFSCDD21 pKa = 5.32DD22 pKa = 5.31DD23 pKa = 6.69DD24 pKa = 7.34DD25 pKa = 5.55SDD27 pKa = 4.11PRR29 pKa = 11.84DD30 pKa = 3.36VNYY33 pKa = 10.36VYY35 pKa = 10.53FVTDD39 pKa = 4.91EE40 pKa = 4.08IPAPDD45 pKa = 3.96EE46 pKa = 4.58FGDD49 pKa = 4.6PNVQLQFNTSSNNIEE64 pKa = 4.08VVIRR68 pKa = 11.84TSVEE72 pKa = 3.25IGTAATTVVAEE83 pKa = 4.19YY84 pKa = 8.95TQDD87 pKa = 3.13VTSYY91 pKa = 11.24NRR93 pKa = 11.84DD94 pKa = 2.93GDD96 pKa = 3.89NYY98 pKa = 10.66SIQIDD103 pKa = 3.56SGSTYY108 pKa = 10.06NQEE111 pKa = 3.67LKK113 pKa = 10.91ADD115 pKa = 4.05VGCVSIPDD123 pKa = 3.77SGFSMGKK130 pKa = 6.25TTTSVSLDD138 pKa = 4.67DD139 pKa = 3.57ILVWDD144 pKa = 4.47SSNSKK149 pKa = 10.7YY150 pKa = 10.71YY151 pKa = 10.21IPGEE155 pKa = 4.02KK156 pKa = 9.65LGEE159 pKa = 4.02LLGVVVDD166 pKa = 4.4PEE168 pKa = 4.43FGQGGGGNVVYY179 pKa = 9.6PKK181 pKa = 9.69IWSSDD186 pKa = 3.18GSIMKK191 pKa = 10.42CGEE194 pKa = 4.2FPTNLPNN201 pKa = 4.15

Molecular weight: 21.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B1FXI0|A0A1B1FXI0_9BACT 1 4-beta-xylanase OS=Flammeovirga sp. MY04 OX=1191459 GN=MY04_3522 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84KK11 pKa = 9.07RR12 pKa = 11.84KK13 pKa = 8.41NKK15 pKa = 9.86HH16 pKa = 4.44GFRR19 pKa = 11.84QRR21 pKa = 11.84MLTANGRR28 pKa = 11.84NVLASRR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 9.6KK37 pKa = 10.04GRR39 pKa = 11.84KK40 pKa = 8.87SLTVSDD46 pKa = 4.03SRR48 pKa = 11.84KK49 pKa = 10.05HH50 pKa = 5.27KK51 pKa = 10.79AA52 pKa = 3.07

Molecular weight: 6.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5416

1

5417

2124546

36

5547

392.2

44.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.794 ± 0.036

0.713 ± 0.009

6.042 ± 0.026

6.929 ± 0.035

5.069 ± 0.023

6.569 ± 0.036

1.941 ± 0.014

7.494 ± 0.029

7.479 ± 0.052

8.881 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.355 ± 0.015

6.059 ± 0.032

3.389 ± 0.021

3.68 ± 0.018

3.361 ± 0.023

6.694 ± 0.029

5.678 ± 0.041

6.303 ± 0.029

1.219 ± 0.013

4.35 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski