Leptotrombidium deliense

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Chelicerata; Arachnida; Acari; Acariformes; Trombidiformes; Prostigmata; Anystina; Parasitengona; Trombiculoidea; Trombiculidae; Leptotrombidium

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14651 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A443SIS6|A0A443SIS6_9ACAR Dickkopf-related protein 3-like protein OS=Leptotrombidium deliense OX=299467 GN=B4U80_01784 PE=4 SV=1
MM1 pKa = 7.36YY2 pKa = 10.3LFEE5 pKa = 4.86YY6 pKa = 9.35NTVKK10 pKa = 10.92GGDD13 pKa = 3.72DD14 pKa = 3.18LKK16 pKa = 11.36EE17 pKa = 4.15AFEE20 pKa = 4.23QCAVAMFAYY29 pKa = 7.58MTDD32 pKa = 3.13IEE34 pKa = 4.49TVEE37 pKa = 4.14IKK39 pKa = 10.3EE40 pKa = 4.28SQDD43 pKa = 3.22IEE45 pKa = 4.18ITGDD49 pKa = 3.59DD50 pKa = 3.93MLSLLFQYY58 pKa = 11.1LDD60 pKa = 3.42DD61 pKa = 4.23FLFNFSAEE69 pKa = 4.07PFFIARR75 pKa = 4.02

Molecular weight: 8.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A443SE82|A0A443SE82_9ACAR Platelet glycoprotein 4-like protein OS=Leptotrombidium deliense OX=299467 GN=B4U80_05167 PE=3 SV=1
MM1 pKa = 7.12QLHH4 pKa = 6.02TSVVSIRR11 pKa = 11.84QNLSVVSIRR20 pKa = 11.84PTLSVVSIRR29 pKa = 11.84QNLSVVSIRR38 pKa = 11.84HH39 pKa = 4.7TLSVVSIRR47 pKa = 11.84QNISVVSIRR56 pKa = 11.84KK57 pKa = 8.3NLSVVSIRR65 pKa = 11.84PTLSVVSIRR74 pKa = 11.84QNLSVV79 pKa = 3.55

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14651

0

14651

5034946

8

4988

343.7

39.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.609 ± 0.017

2.294 ± 0.016

5.374 ± 0.016

6.553 ± 0.022

4.755 ± 0.018

4.953 ± 0.023

2.345 ± 0.01

6.489 ± 0.018

7.162 ± 0.022

9.048 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.241 ± 0.009

5.879 ± 0.017

4.07 ± 0.019

3.791 ± 0.015

4.795 ± 0.014

8.092 ± 0.029

5.554 ± 0.016

6.443 ± 0.014

1.11 ± 0.006

3.445 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski