Pygoscelis adeliae papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treisepsilonpapillomavirus; Treisepsilonpapillomavirus 1

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X2JJ85|X2JJ85_9PAPI Major capsid protein L1 OS=Pygoscelis adeliae papillomavirus 1 OX=1480065 GN=L1 PE=3 SV=1
MM1 pKa = 7.47LTRR4 pKa = 11.84DD5 pKa = 3.63PSGLRR10 pKa = 11.84PRR12 pKa = 11.84PFKK15 pKa = 11.23DD16 pKa = 3.35CDD18 pKa = 3.76DD19 pKa = 5.08GEE21 pKa = 4.59LSTTEE26 pKa = 3.94EE27 pKa = 4.82LEE29 pKa = 3.66VDD31 pKa = 4.39LYY33 pKa = 11.72VDD35 pKa = 4.27IIEE38 pKa = 5.36DD39 pKa = 3.7SSSDD43 pKa = 3.65DD44 pKa = 3.95DD45 pKa = 5.26SDD47 pKa = 4.09FEE49 pKa = 4.88GYY51 pKa = 10.27YY52 pKa = 10.8DD53 pKa = 3.87CTLEE57 pKa = 4.33TLMCQEE63 pKa = 5.19GPLSDD68 pKa = 4.14SSSDD72 pKa = 3.53SDD74 pKa = 3.98SGADD78 pKa = 3.66NEE80 pKa = 5.0APPPPPPGAPQPLPHH95 pKa = 7.94VEE97 pKa = 4.27DD98 pKa = 3.72PTIEE102 pKa = 4.21EE103 pKa = 4.34LLQEE107 pKa = 4.51FGGNNDD113 pKa = 3.75NDD115 pKa = 3.73QEE117 pKa = 4.46EE118 pKa = 4.92CGWTCYY124 pKa = 10.05FCEE127 pKa = 5.14GPLNPTEE134 pKa = 4.15CFLYY138 pKa = 10.43GAFDD142 pKa = 3.92EE143 pKa = 4.45EE144 pKa = 4.94HH145 pKa = 6.75SKK147 pKa = 11.15GMCNSCYY154 pKa = 10.66VSTLSDD160 pKa = 3.54FEE162 pKa = 4.33EE163 pKa = 4.45

Molecular weight: 18.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X2JSD9|X2JSD9_9PAPI E9 OS=Pygoscelis adeliae papillomavirus 1 OX=1480065 PE=4 SV=1
MM1 pKa = 6.97PTIYY5 pKa = 10.46YY6 pKa = 8.62PNWEE10 pKa = 4.25TVYY13 pKa = 10.93LIRR16 pKa = 11.84DD17 pKa = 3.93PEE19 pKa = 4.25NLPMDD24 pKa = 4.1GMTSVTLRR32 pKa = 11.84TNSDD36 pKa = 3.33QQSWRR41 pKa = 11.84CCNLALPIFLKK52 pKa = 10.68RR53 pKa = 11.84AGDD56 pKa = 3.95GLRR59 pKa = 11.84LRR61 pKa = 11.84CIDD64 pKa = 3.27QHH66 pKa = 7.66LPTLTRR72 pKa = 11.84RR73 pKa = 11.84ITGTADD79 pKa = 4.7RR80 pKa = 11.84IPTQDD85 pKa = 2.68TRR87 pKa = 11.84LDD89 pKa = 3.65VLVDD93 pKa = 3.91LGWRR97 pKa = 11.84TEE99 pKa = 3.89YY100 pKa = 11.19LLRR103 pKa = 11.84TRR105 pKa = 11.84LPWNTCTVITPTEE118 pKa = 4.17NLCSLYY124 pKa = 10.55QLLGPSTQEE133 pKa = 3.33AAEE136 pKa = 4.03RR137 pKa = 11.84RR138 pKa = 11.84RR139 pKa = 11.84DD140 pKa = 3.65LMVALLEE147 pKa = 4.65LNTEE151 pKa = 3.79RR152 pKa = 11.84RR153 pKa = 11.84QRR155 pKa = 11.84HH156 pKa = 4.56LRR158 pKa = 11.84RR159 pKa = 11.84GRR161 pKa = 11.84MRR163 pKa = 11.84GMSYY167 pKa = 11.17YY168 pKa = 10.52NAYY171 pKa = 10.12

Molecular weight: 20.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2564

96

676

366.3

41.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.889 ± 0.632

2.34 ± 0.618

7.098 ± 0.636

5.694 ± 0.919

2.886 ± 0.37

7.566 ± 1.112

2.184 ± 0.354

3.861 ± 0.382

2.925 ± 0.805

9.36 ± 0.529

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.911 ± 0.293

3.666 ± 0.683

8.073 ± 0.915

3.939 ± 0.605

7.722 ± 0.753

6.708 ± 0.542

7.566 ± 0.722

5.148 ± 0.523

1.599 ± 0.252

3.861 ± 0.297
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski