Sendai virus (strain Hamamatsu) (SeV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Respirovirus; Murine respirovirus

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9DUE0-2|C-2_SENDA Isoform of Q9DUE0 Isoform C of Protein C' OS=Sendai virus (strain Hamamatsu) OX=302271 GN=P/V/C PE=4 SV=3
MM1 pKa = 7.72AGLLSTFDD9 pKa = 3.61TFSSRR14 pKa = 11.84RR15 pKa = 11.84SEE17 pKa = 4.54SINKK21 pKa = 9.79SGGGAVIPGQRR32 pKa = 11.84STVSVFVLGPSVTDD46 pKa = 3.97DD47 pKa = 3.48ADD49 pKa = 3.63KK50 pKa = 11.51LFIATTFLAHH60 pKa = 7.37SLDD63 pKa = 3.34TDD65 pKa = 3.7KK66 pKa = 11.24QHH68 pKa = 5.75SQRR71 pKa = 11.84GGFLVSLLAMAYY83 pKa = 9.77SSPEE87 pKa = 3.87LYY89 pKa = 9.56LTTNGVNADD98 pKa = 3.69VKK100 pKa = 10.02YY101 pKa = 10.81VIYY104 pKa = 10.7NIEE107 pKa = 4.31KK108 pKa = 10.15DD109 pKa = 3.6PKK111 pKa = 8.86RR112 pKa = 11.84TKK114 pKa = 10.08TDD116 pKa = 2.85GFIVKK121 pKa = 8.33TRR123 pKa = 11.84DD124 pKa = 3.0MEE126 pKa = 4.37YY127 pKa = 10.88EE128 pKa = 4.02RR129 pKa = 11.84TTEE132 pKa = 3.92WLFGPMVNKK141 pKa = 10.47SPLFQGQRR149 pKa = 11.84DD150 pKa = 3.65AADD153 pKa = 4.71PDD155 pKa = 4.11TLLQIYY161 pKa = 8.23GYY163 pKa = 7.7PACLGAIIVQVWIVLVKK180 pKa = 10.76AITSSAGLRR189 pKa = 11.84KK190 pKa = 10.19GFFNRR195 pKa = 11.84LEE197 pKa = 4.14AFRR200 pKa = 11.84QDD202 pKa = 3.37GTVKK206 pKa = 10.4GALVFTGEE214 pKa = 4.37TVEE217 pKa = 5.1GIGSVMRR224 pKa = 11.84SQQSLVSLMVEE235 pKa = 4.16TLVTMNTARR244 pKa = 11.84SDD246 pKa = 3.53LTTLEE251 pKa = 4.27KK252 pKa = 10.74NIQIVGNYY260 pKa = 8.94IRR262 pKa = 11.84DD263 pKa = 3.52AGLASFMNTIKK274 pKa = 11.03YY275 pKa = 10.01GVEE278 pKa = 3.61TKK280 pKa = 9.64MAALTLSNLRR290 pKa = 11.84PDD292 pKa = 3.45INKK295 pKa = 9.15LRR297 pKa = 11.84SLIDD301 pKa = 3.3TYY303 pKa = 11.25LSKK306 pKa = 11.09GPRR309 pKa = 11.84APFICILKK317 pKa = 10.47DD318 pKa = 3.39PVHH321 pKa = 7.11GEE323 pKa = 4.29FAPGNYY329 pKa = 7.59PALWSYY335 pKa = 11.87AMGVAVVQNKK345 pKa = 9.23AMQQYY350 pKa = 7.92VTGRR354 pKa = 11.84TYY356 pKa = 11.73LDD358 pKa = 3.07MEE360 pKa = 4.5MFLLGQAVAKK370 pKa = 10.25DD371 pKa = 3.9AEE373 pKa = 4.71SKK375 pKa = 10.5ISSALEE381 pKa = 4.16DD382 pKa = 3.8EE383 pKa = 5.42LGVTDD388 pKa = 3.67TAKK391 pKa = 10.49EE392 pKa = 3.98RR393 pKa = 11.84LRR395 pKa = 11.84HH396 pKa = 5.46HH397 pKa = 7.16LANLSGGDD405 pKa = 3.73GAYY408 pKa = 10.07HH409 pKa = 6.96KK410 pKa = 8.27PTGGGAIEE418 pKa = 4.23VALDD422 pKa = 3.43NADD425 pKa = 3.3IDD427 pKa = 4.61LEE429 pKa = 4.57PEE431 pKa = 3.58AHH433 pKa = 6.61TDD435 pKa = 2.8QDD437 pKa = 3.45ARR439 pKa = 11.84GWGGDD444 pKa = 3.45SGDD447 pKa = 2.92RR448 pKa = 11.84WARR451 pKa = 11.84STSSGHH457 pKa = 7.13FITLHH462 pKa = 4.9GAEE465 pKa = 4.1RR466 pKa = 11.84LEE468 pKa = 4.51EE469 pKa = 4.07EE470 pKa = 4.7TNDD473 pKa = 3.59EE474 pKa = 4.17DD475 pKa = 4.66VSDD478 pKa = 3.67IEE480 pKa = 4.26RR481 pKa = 11.84RR482 pKa = 11.84IARR485 pKa = 11.84RR486 pKa = 11.84LAEE489 pKa = 4.24RR490 pKa = 11.84RR491 pKa = 11.84QEE493 pKa = 3.99DD494 pKa = 3.76ATTHH498 pKa = 5.81EE499 pKa = 4.75DD500 pKa = 3.0EE501 pKa = 4.6GRR503 pKa = 11.84NNGVDD508 pKa = 3.44HH509 pKa = 7.73DD510 pKa = 4.74EE511 pKa = 4.59EE512 pKa = 6.63DD513 pKa = 4.03DD514 pKa = 3.75AAAAAGMGGII524 pKa = 4.58

Molecular weight: 57.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9DUD8|L_SENDA RNA-directed RNA polymerase L OS=Sendai virus (strain Hamamatsu) OX=302271 GN=L PE=3 SV=1
MM1 pKa = 7.6ADD3 pKa = 3.36IYY5 pKa = 10.85RR6 pKa = 11.84FPKK9 pKa = 10.59FSYY12 pKa = 9.74EE13 pKa = 4.12DD14 pKa = 3.44NGTVEE19 pKa = 4.59PLPLRR24 pKa = 11.84TGPDD28 pKa = 3.01KK29 pKa = 10.99KK30 pKa = 10.56AIPHH34 pKa = 5.1IRR36 pKa = 11.84IVKK39 pKa = 10.01VGDD42 pKa = 3.63PPKK45 pKa = 10.69HH46 pKa = 4.84GVRR49 pKa = 11.84YY50 pKa = 10.03LDD52 pKa = 3.96LLLLGFFEE60 pKa = 4.94TPKK63 pKa = 9.29QTASLGSVSDD73 pKa = 3.85LTEE76 pKa = 3.71HH77 pKa = 6.4TGYY80 pKa = 10.33SICGSGSLPIGVAKK94 pKa = 10.31YY95 pKa = 10.04HH96 pKa = 6.94GSDD99 pKa = 3.34QEE101 pKa = 4.2LLKK104 pKa = 11.05ACTDD108 pKa = 3.21LRR110 pKa = 11.84ITVRR114 pKa = 11.84RR115 pKa = 11.84TVRR118 pKa = 11.84AGEE121 pKa = 4.17MIVYY125 pKa = 8.62MVDD128 pKa = 3.46SIGAPLLPWSGRR140 pKa = 11.84LRR142 pKa = 11.84QGMIFNANKK151 pKa = 9.77VALAPQCLPVDD162 pKa = 3.23KK163 pKa = 10.48DD164 pKa = 2.96IRR166 pKa = 11.84FRR168 pKa = 11.84VVFVNGTSLGAITIAKK184 pKa = 9.25IPKK187 pKa = 8.6TLADD191 pKa = 3.79LALPNSISVNLLVTLKK207 pKa = 10.09TGIPTEE213 pKa = 4.17QKK215 pKa = 10.68GVLPVLDD222 pKa = 4.08DD223 pKa = 3.73QGEE226 pKa = 4.28KK227 pKa = 10.49KK228 pKa = 10.88LNFMVHH234 pKa = 6.52LGLIRR239 pKa = 11.84RR240 pKa = 11.84KK241 pKa = 9.27VGKK244 pKa = 9.46IYY246 pKa = 10.67SVEE249 pKa = 4.02YY250 pKa = 9.84CKK252 pKa = 11.04SKK254 pKa = 10.18IEE256 pKa = 3.93RR257 pKa = 11.84MRR259 pKa = 11.84LIFSLGLIGGISFHH273 pKa = 5.67VQVTGTLSKK282 pKa = 10.13TFMSQLAWKK291 pKa = 10.01RR292 pKa = 11.84AVCFPLMDD300 pKa = 4.24VNPHH304 pKa = 5.39MNLVIWAASVEE315 pKa = 4.28ITDD318 pKa = 3.38VDD320 pKa = 4.49AVFQPAIPRR329 pKa = 11.84DD330 pKa = 3.38FRR332 pKa = 11.84YY333 pKa = 10.38YY334 pKa = 10.21PNVVAKK340 pKa = 10.68NIGRR344 pKa = 11.84IRR346 pKa = 11.84KK347 pKa = 8.53LL348 pKa = 3.16

Molecular weight: 38.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

2

10

5777

181

2228

577.7

64.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.007 ± 0.58

1.489 ± 0.305

5.816 ± 0.343

6.959 ± 0.717

2.51 ± 0.486

6.439 ± 0.554

1.991 ± 0.089

6.612 ± 0.582

5.383 ± 0.354

9.936 ± 0.889

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.195

3.981 ± 0.308

4.795 ± 0.532

3.566 ± 0.379

6.664 ± 0.528

8.343 ± 0.51

6.699 ± 0.344

6.266 ± 0.399

1.177 ± 0.196

3.185 ± 0.447
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski