Amino acid dipepetide frequency for Sendai virus (strain Hamamatsu) (SeV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.501AlaAla: 4.501 ± 0.945
0.693AlaCys: 0.693 ± 0.327
3.809AlaAsp: 3.809 ± 0.825
3.809AlaGlu: 3.809 ± 1.144
1.039AlaPhe: 1.039 ± 0.35
2.943AlaGly: 2.943 ± 0.797
1.731AlaHis: 1.731 ± 0.532
3.463AlaIle: 3.463 ± 0.903
2.424AlaLys: 2.424 ± 0.61
7.964AlaLeu: 7.964 ± 1.096
1.904AlaMet: 1.904 ± 0.64
2.943AlaAsn: 2.943 ± 0.958
1.904AlaPro: 1.904 ± 0.607
1.731AlaGln: 1.731 ± 0.656
3.463AlaArg: 3.463 ± 0.801
3.982AlaSer: 3.982 ± 0.919
4.155AlaThr: 4.155 ± 1.067
4.848AlaVal: 4.848 ± 0.637
1.039AlaTrp: 1.039 ± 0.589
1.731AlaTyr: 1.731 ± 0.55
0.0AlaXaa: 0.0 ± 0.0
Cys
0.519CysAla: 0.519 ± 0.243
0.173CysCys: 0.173 ± 0.117
1.212CysAsp: 1.212 ± 0.642
0.519CysGlu: 0.519 ± 0.232
0.693CysPhe: 0.693 ± 0.276
0.866CysGly: 0.866 ± 0.622
0.346CysHis: 0.346 ± 0.234
1.904CysIle: 1.904 ± 0.622
1.212CysLys: 1.212 ± 0.396
1.039CysLeu: 1.039 ± 0.435
0.173CysMet: 0.173 ± 0.117
1.039CysAsn: 1.039 ± 0.605
1.039CysPro: 1.039 ± 0.504
0.693CysGln: 0.693 ± 0.226
0.519CysArg: 0.519 ± 0.253
1.212CysSer: 1.212 ± 0.478
0.866CysThr: 0.866 ± 0.336
0.693CysVal: 0.693 ± 0.264
0.0CysTrp: 0.0 ± 0.0
0.173CysTyr: 0.173 ± 0.117
0.0CysXaa: 0.0 ± 0.0
Asp
3.809AspAla: 3.809 ± 1.613
0.346AspCys: 0.346 ± 0.275
2.078AspAsp: 2.078 ± 0.819
5.021AspGlu: 5.021 ± 0.898
1.385AspPhe: 1.385 ± 0.533
2.77AspGly: 2.77 ± 0.506
1.212AspHis: 1.212 ± 0.233
4.328AspIle: 4.328 ± 0.528
2.943AspLys: 2.943 ± 0.798
5.367AspLeu: 5.367 ± 0.976
1.385AspMet: 1.385 ± 0.345
3.463AspAsn: 3.463 ± 0.615
3.809AspPro: 3.809 ± 0.956
3.116AspGln: 3.116 ± 1.082
3.289AspArg: 3.289 ± 0.658
5.021AspSer: 5.021 ± 0.506
3.636AspThr: 3.636 ± 0.817
3.809AspVal: 3.809 ± 0.582
0.866AspTrp: 0.866 ± 0.586
0.519AspTyr: 0.519 ± 0.399
0.0AspXaa: 0.0 ± 0.0
Glu
6.06GluAla: 6.06 ± 0.944
1.039GluCys: 1.039 ± 0.532
5.021GluAsp: 5.021 ± 1.384
5.713GluGlu: 5.713 ± 2.402
1.039GluPhe: 1.039 ± 0.385
5.021GluGly: 5.021 ± 1.086
0.866GluHis: 0.866 ± 0.4
4.328GluIle: 4.328 ± 1.469
4.848GluLys: 4.848 ± 1.206
5.713GluLeu: 5.713 ± 1.03
1.731GluMet: 1.731 ± 0.663
2.251GluAsn: 2.251 ± 0.796
3.463GluPro: 3.463 ± 0.393
1.731GluGln: 1.731 ± 1.119
3.809GluArg: 3.809 ± 1.109
6.406GluSer: 6.406 ± 1.504
4.675GluThr: 4.675 ± 1.323
3.809GluVal: 3.809 ± 0.478
0.693GluTrp: 0.693 ± 0.247
1.212GluTyr: 1.212 ± 0.372
0.0GluXaa: 0.0 ± 0.0
Phe
1.385PheAla: 1.385 ± 0.556
0.346PheCys: 0.346 ± 0.234
0.866PheAsp: 0.866 ± 0.259
1.558PheGlu: 1.558 ± 0.746
0.866PhePhe: 0.866 ± 0.282
2.424PheGly: 2.424 ± 0.806
0.519PheHis: 0.519 ± 0.253
2.078PheIle: 2.078 ± 0.921
1.212PheLys: 1.212 ± 0.642
3.463PheLeu: 3.463 ± 0.555
1.039PheMet: 1.039 ± 0.465
1.731PheAsn: 1.731 ± 0.673
1.039PhePro: 1.039 ± 0.45
1.039PheGln: 1.039 ± 0.532
1.212PheArg: 1.212 ± 0.468
1.904PheSer: 1.904 ± 0.533
0.519PheThr: 0.519 ± 0.221
1.039PheVal: 1.039 ± 0.389
0.693PheTrp: 0.693 ± 0.326
0.173PheTyr: 0.173 ± 0.117
0.0PheXaa: 0.0 ± 0.0
Gly
3.982GlyAla: 3.982 ± 0.999
1.039GlyCys: 1.039 ± 0.662
3.289GlyAsp: 3.289 ± 0.48
6.752GlyGlu: 6.752 ± 1.746
2.078GlyPhe: 2.078 ± 0.522
5.713GlyGly: 5.713 ± 1.35
1.212GlyHis: 1.212 ± 0.379
3.982GlyIle: 3.982 ± 0.565
2.424GlyLys: 2.424 ± 0.763
3.636GlyLeu: 3.636 ± 0.76
1.212GlyMet: 1.212 ± 0.535
1.558GlyAsn: 1.558 ± 0.327
2.597GlyPro: 2.597 ± 0.559
2.251GlyGln: 2.251 ± 0.65
4.848GlyArg: 4.848 ± 0.957
5.021GlySer: 5.021 ± 0.74
3.116GlyThr: 3.116 ± 0.909
5.54GlyVal: 5.54 ± 1.352
0.346GlyTrp: 0.346 ± 0.276
3.809GlyTyr: 3.809 ± 0.98
0.0GlyXaa: 0.0 ± 0.0
His
1.039HisAla: 1.039 ± 0.285
0.173HisCys: 0.173 ± 0.117
1.039HisAsp: 1.039 ± 0.436
1.558HisGlu: 1.558 ± 0.502
0.346HisPhe: 0.346 ± 0.276
1.212HisGly: 1.212 ± 0.522
0.346HisHis: 0.346 ± 0.276
1.385HisIle: 1.385 ± 0.67
0.866HisLys: 0.866 ± 0.374
1.385HisLeu: 1.385 ± 0.64
1.039HisMet: 1.039 ± 0.508
0.866HisAsn: 0.866 ± 0.304
2.078HisPro: 2.078 ± 0.506
0.519HisGln: 0.519 ± 0.352
1.558HisArg: 1.558 ± 0.569
1.558HisSer: 1.558 ± 0.534
1.039HisThr: 1.039 ± 0.335
1.212HisVal: 1.212 ± 0.699
0.346HisTrp: 0.346 ± 0.244
0.346HisTyr: 0.346 ± 0.176
0.0HisXaa: 0.0 ± 0.0
Ile
5.021IleAla: 5.021 ± 1.253
1.385IleCys: 1.385 ± 0.283
2.251IleAsp: 2.251 ± 0.485
3.809IleGlu: 3.809 ± 0.654
1.731IlePhe: 1.731 ± 0.778
4.155IleGly: 4.155 ± 0.807
1.558IleHis: 1.558 ± 0.467
3.636IleIle: 3.636 ± 0.804
3.289IleLys: 3.289 ± 0.783
5.54IleLeu: 5.54 ± 0.945
1.558IleMet: 1.558 ± 0.52
2.597IleAsn: 2.597 ± 0.582
4.155IlePro: 4.155 ± 0.822
1.904IleGln: 1.904 ± 0.89
5.367IleArg: 5.367 ± 0.782
5.194IleSer: 5.194 ± 1.01
4.848IleThr: 4.848 ± 0.945
3.636IleVal: 3.636 ± 1.492
1.039IleTrp: 1.039 ± 0.475
3.463IleTyr: 3.463 ± 0.328
0.0IleXaa: 0.0 ± 0.0
Lys
3.809LysAla: 3.809 ± 0.696
0.693LysCys: 0.693 ± 0.292
3.982LysAsp: 3.982 ± 0.943
3.636LysGlu: 3.636 ± 0.656
1.212LysPhe: 1.212 ± 0.53
3.809LysGly: 3.809 ± 0.565
0.866LysHis: 0.866 ± 0.496
5.367LysIle: 5.367 ± 1.523
2.078LysLys: 2.078 ± 0.63
4.501LysLeu: 4.501 ± 0.801
1.731LysMet: 1.731 ± 0.603
1.039LysAsn: 1.039 ± 0.297
1.558LysPro: 1.558 ± 0.509
1.904LysGln: 1.904 ± 0.461
3.982LysArg: 3.982 ± 0.441
4.155LysSer: 4.155 ± 0.998
4.675LysThr: 4.675 ± 0.842
3.289LysVal: 3.289 ± 0.961
0.346LysTrp: 0.346 ± 0.234
1.212LysTyr: 1.212 ± 0.372
0.0LysXaa: 0.0 ± 0.0
Leu
5.021LeuAla: 5.021 ± 1.106
1.212LeuCys: 1.212 ± 0.672
4.848LeuAsp: 4.848 ± 1.183
6.233LeuGlu: 6.233 ± 0.992
2.77LeuPhe: 2.77 ± 1.172
7.271LeuGly: 7.271 ± 0.827
1.731LeuHis: 1.731 ± 0.534
6.579LeuIle: 6.579 ± 1.278
7.618LeuLys: 7.618 ± 1.734
7.098LeuLeu: 7.098 ± 1.127
2.078LeuMet: 2.078 ± 0.479
3.116LeuAsn: 3.116 ± 1.048
3.809LeuPro: 3.809 ± 1.205
4.501LeuGln: 4.501 ± 0.721
7.098LeuArg: 7.098 ± 1.301
10.215LeuSer: 10.215 ± 1.322
7.964LeuThr: 7.964 ± 1.339
6.579LeuVal: 6.579 ± 0.959
0.693LeuTrp: 0.693 ± 0.32
2.943LeuTyr: 2.943 ± 0.56
0.0LeuXaa: 0.0 ± 0.0
Met
1.731MetAla: 1.731 ± 0.709
0.173MetCys: 0.173 ± 0.117
1.039MetAsp: 1.039 ± 0.284
2.424MetGlu: 2.424 ± 0.985
0.866MetPhe: 0.866 ± 0.277
0.519MetGly: 0.519 ± 0.426
0.519MetHis: 0.519 ± 0.352
0.866MetIle: 0.866 ± 0.406
2.078MetLys: 2.078 ± 0.925
2.251MetLeu: 2.251 ± 0.899
0.0MetMet: 0.0 ± 0.0
1.039MetAsn: 1.039 ± 0.418
0.519MetPro: 0.519 ± 0.422
0.346MetGln: 0.346 ± 0.177
1.731MetArg: 1.731 ± 0.538
1.212MetSer: 1.212 ± 0.38
1.904MetThr: 1.904 ± 0.659
1.558MetVal: 1.558 ± 0.53
0.173MetTrp: 0.173 ± 0.117
0.866MetTyr: 0.866 ± 0.282
0.0MetXaa: 0.0 ± 0.0
Asn
1.558AsnAla: 1.558 ± 0.385
0.519AsnCys: 0.519 ± 0.345
1.731AsnAsp: 1.731 ± 0.436
1.731AsnGlu: 1.731 ± 0.521
0.519AsnPhe: 0.519 ± 0.234
3.636AsnGly: 3.636 ± 0.758
0.173AsnHis: 0.173 ± 0.117
4.501AsnIle: 4.501 ± 1.012
2.943AsnLys: 2.943 ± 0.908
3.982AsnLeu: 3.982 ± 1.126
0.866AsnMet: 0.866 ± 0.322
1.212AsnAsn: 1.212 ± 0.346
3.289AsnPro: 3.289 ± 0.711
1.558AsnGln: 1.558 ± 0.526
2.078AsnArg: 2.078 ± 0.716
3.289AsnSer: 3.289 ± 0.707
2.77AsnThr: 2.77 ± 1.303
1.385AsnVal: 1.385 ± 0.369
0.693AsnTrp: 0.693 ± 0.326
1.385AsnTyr: 1.385 ± 0.345
0.0AsnXaa: 0.0 ± 0.0
Pro
3.289ProAla: 3.289 ± 0.588
0.346ProCys: 0.346 ± 0.234
3.982ProAsp: 3.982 ± 0.947
3.982ProGlu: 3.982 ± 0.744
0.866ProPhe: 0.866 ± 0.277
2.424ProGly: 2.424 ± 0.691
1.212ProHis: 1.212 ± 0.56
1.385ProIle: 1.385 ± 0.387
3.116ProLys: 3.116 ± 1.261
5.021ProLeu: 5.021 ± 0.845
0.346ProMet: 0.346 ± 0.276
1.212ProAsn: 1.212 ± 0.448
2.597ProPro: 2.597 ± 1.36
1.212ProGln: 1.212 ± 0.288
3.636ProArg: 3.636 ± 0.645
3.982ProSer: 3.982 ± 1.607
3.809ProThr: 3.809 ± 1.484
3.463ProVal: 3.463 ± 0.508
0.173ProTrp: 0.173 ± 0.197
1.904ProTyr: 1.904 ± 0.675
0.0ProXaa: 0.0 ± 0.0
Gln
2.078GlnAla: 2.078 ± 0.984
0.519GlnCys: 0.519 ± 0.234
3.116GlnAsp: 3.116 ± 0.909
3.636GlnGlu: 3.636 ± 0.776
0.173GlnPhe: 0.173 ± 0.117
1.731GlnGly: 1.731 ± 0.792
0.346GlnHis: 0.346 ± 0.286
2.251GlnIle: 2.251 ± 0.899
2.77GlnLys: 2.77 ± 0.798
3.982GlnLeu: 3.982 ± 1.009
0.693GlnMet: 0.693 ± 0.468
1.904GlnAsn: 1.904 ± 0.36
0.519GlnPro: 0.519 ± 0.253
1.212GlnGln: 1.212 ± 0.337
2.597GlnArg: 2.597 ± 0.682
1.558GlnSer: 1.558 ± 0.655
1.731GlnThr: 1.731 ± 0.516
3.809GlnVal: 3.809 ± 1.544
0.346GlnTrp: 0.346 ± 0.198
0.693GlnTyr: 0.693 ± 0.247
0.0GlnXaa: 0.0 ± 0.0
Arg
4.155ArgAla: 4.155 ± 0.668
1.039ArgCys: 1.039 ± 0.369
5.194ArgAsp: 5.194 ± 0.926
4.328ArgGlu: 4.328 ± 1.204
1.904ArgPhe: 1.904 ± 0.614
4.155ArgGly: 4.155 ± 0.789
1.904ArgHis: 1.904 ± 0.553
3.463ArgIle: 3.463 ± 0.654
2.251ArgLys: 2.251 ± 0.372
5.54ArgLeu: 5.54 ± 1.185
0.866ArgMet: 0.866 ± 0.393
2.77ArgAsn: 2.77 ± 0.815
3.463ArgPro: 3.463 ± 0.931
2.77ArgGln: 2.77 ± 0.798
5.021ArgArg: 5.021 ± 1.743
7.271ArgSer: 7.271 ± 1.644
2.77ArgThr: 2.77 ± 0.6
3.809ArgVal: 3.809 ± 0.57
1.212ArgTrp: 1.212 ± 0.483
2.77ArgTyr: 2.77 ± 0.545
0.0ArgXaa: 0.0 ± 0.0
Ser
3.982SerAla: 3.982 ± 1.122
1.558SerCys: 1.558 ± 0.607
3.463SerAsp: 3.463 ± 0.676
4.328SerGlu: 4.328 ± 0.807
2.424SerPhe: 2.424 ± 0.359
6.233SerGly: 6.233 ± 1.581
1.731SerHis: 1.731 ± 0.602
3.463SerIle: 3.463 ± 0.945
4.155SerLys: 4.155 ± 0.668
11.253SerLeu: 11.253 ± 0.751
1.731SerMet: 1.731 ± 0.892
3.463SerAsn: 3.463 ± 0.817
4.155SerPro: 4.155 ± 1.137
2.77SerGln: 2.77 ± 0.431
6.406SerArg: 6.406 ± 1.344
6.233SerSer: 6.233 ± 0.748
7.964SerThr: 7.964 ± 1.371
4.675SerVal: 4.675 ± 0.727
1.039SerTrp: 1.039 ± 0.36
2.424SerTyr: 2.424 ± 0.352
0.0SerXaa: 0.0 ± 0.0
Thr
2.424ThrAla: 2.424 ± 0.798
0.866ThrCys: 0.866 ± 0.487
5.021ThrAsp: 5.021 ± 1.203
3.982ThrGlu: 3.982 ± 1.298
2.078ThrPhe: 2.078 ± 0.686
4.675ThrGly: 4.675 ± 0.789
1.558ThrHis: 1.558 ± 0.601
5.367ThrIle: 5.367 ± 0.733
3.289ThrLys: 3.289 ± 0.678
8.31ThrLeu: 8.31 ± 1.144
0.866ThrMet: 0.866 ± 0.259
1.904ThrAsn: 1.904 ± 0.471
2.77ThrPro: 2.77 ± 1.034
2.424ThrGln: 2.424 ± 0.995
4.328ThrArg: 4.328 ± 0.938
6.06ThrSer: 6.06 ± 0.793
3.809ThrThr: 3.809 ± 1.44
3.463ThrVal: 3.463 ± 1.071
1.212ThrTrp: 1.212 ± 0.43
2.597ThrTyr: 2.597 ± 0.778
0.0ThrXaa: 0.0 ± 0.0
Val
2.77ValAla: 2.77 ± 0.675
1.385ValCys: 1.385 ± 0.469
3.809ValAsp: 3.809 ± 0.737
4.328ValGlu: 4.328 ± 1.136
2.251ValPhe: 2.251 ± 0.545
2.597ValGly: 2.597 ± 0.703
1.385ValHis: 1.385 ± 0.486
5.194ValIle: 5.194 ± 1.314
2.597ValLys: 2.597 ± 0.602
7.791ValLeu: 7.791 ± 1.008
1.039ValMet: 1.039 ± 0.28
3.982ValAsn: 3.982 ± 0.608
2.597ValPro: 2.597 ± 0.645
2.424ValGln: 2.424 ± 1.054
4.328ValArg: 4.328 ± 1.206
3.982ValSer: 3.982 ± 1.041
3.463ValThr: 3.463 ± 0.78
4.328ValVal: 4.328 ± 0.997
0.173ValTrp: 0.173 ± 0.193
2.251ValTyr: 2.251 ± 0.86
0.0ValXaa: 0.0 ± 0.0
Trp
1.904TrpAla: 1.904 ± 0.447
0.173TrpCys: 0.173 ± 0.187
0.693TrpAsp: 0.693 ± 0.469
0.173TrpGlu: 0.173 ± 0.117
0.346TrpPhe: 0.346 ± 0.234
0.693TrpGly: 0.693 ± 0.247
0.173TrpHis: 0.173 ± 0.217
0.866TrpIle: 0.866 ± 0.333
0.173TrpLys: 0.173 ± 0.197
1.904TrpLeu: 1.904 ± 0.522
0.519TrpMet: 0.519 ± 0.352
0.519TrpAsn: 0.519 ± 0.352
0.173TrpPro: 0.173 ± 0.117
0.173TrpGln: 0.173 ± 0.117
0.346TrpArg: 0.346 ± 0.198
1.385TrpSer: 1.385 ± 0.486
0.519TrpThr: 0.519 ± 0.243
0.346TrpVal: 0.346 ± 0.234
0.0TrpTrp: 0.0 ± 0.0
0.693TrpTyr: 0.693 ± 0.362
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.039TyrAla: 1.039 ± 0.458
1.212TyrCys: 1.212 ± 0.527
1.731TyrAsp: 1.731 ± 0.797
2.078TyrGlu: 2.078 ± 0.605
0.519TyrPhe: 0.519 ± 0.352
1.558TyrGly: 1.558 ± 0.557
0.519TyrHis: 0.519 ± 0.254
1.731TyrIle: 1.731 ± 0.533
1.558TyrLys: 1.558 ± 0.611
3.636TyrLeu: 3.636 ± 0.914
0.866TyrMet: 0.866 ± 0.336
1.212TyrAsn: 1.212 ± 0.337
2.424TyrPro: 2.424 ± 0.445
1.385TyrGln: 1.385 ± 0.729
1.039TyrArg: 1.039 ± 0.428
3.809TyrSer: 3.809 ± 1.128
2.77TyrThr: 2.77 ± 0.646
1.385TyrVal: 1.385 ± 0.451
0.693TyrTrp: 0.693 ± 0.326
0.693TyrTyr: 0.693 ± 0.374
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 10 proteins (5777 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski