Flavobacterium tangerina

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3128 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P3WA51|A0A3P3WA51_9FLAO 30S ribosomal protein S17 OS=Flavobacterium tangerina OX=2488728 GN=rpsQ PE=3 SV=1
MM1 pKa = 7.58KK2 pKa = 10.39KK3 pKa = 8.68NTILLVIAFFGSITINAQTIASEE26 pKa = 4.17NFEE29 pKa = 4.43TTGLYY34 pKa = 10.16DD35 pKa = 5.18LPVGWFANGDD45 pKa = 3.54FFYY48 pKa = 11.13DD49 pKa = 3.77SFVDD53 pKa = 4.89DD54 pKa = 4.52YY55 pKa = 12.01YY56 pKa = 11.61GGCEE60 pKa = 4.05DD61 pKa = 3.73EE62 pKa = 4.88QYY64 pKa = 10.92IYY66 pKa = 11.26TNLFEE71 pKa = 5.9SDD73 pKa = 3.32SQLFLTSQNYY83 pKa = 10.35LNLNAGPKK91 pKa = 8.64QVSYY95 pKa = 9.05QLRR98 pKa = 11.84VIDD101 pKa = 4.57YY102 pKa = 10.59DD103 pKa = 4.16DD104 pKa = 4.38EE105 pKa = 5.21VPVNYY110 pKa = 10.21DD111 pKa = 3.18FGSITFSYY119 pKa = 10.54SLNDD123 pKa = 3.39GVTWIVLGSVSEE135 pKa = 4.97DD136 pKa = 2.99NFTPSLACQEE146 pKa = 3.52ISYY149 pKa = 9.23TIEE152 pKa = 4.14GSLIAAQSNLKK163 pKa = 10.06FKK165 pKa = 10.44WEE167 pKa = 3.93SAYY170 pKa = 11.02SGEE173 pKa = 4.0GDD175 pKa = 3.99YY176 pKa = 11.21EE177 pKa = 3.95ILIDD181 pKa = 4.49NFMLSEE187 pKa = 4.17SQTASTNEE195 pKa = 3.71LDD197 pKa = 3.69KK198 pKa = 11.33SQLKK202 pKa = 10.08IYY204 pKa = 7.98PNPVSDD210 pKa = 4.58VLNIDD215 pKa = 3.57YY216 pKa = 10.87SSTISKK222 pKa = 9.66FIIFDD227 pKa = 3.6LVGRR231 pKa = 11.84KK232 pKa = 8.97IGEE235 pKa = 4.02FSNSGNLNSIDD246 pKa = 3.77VSNLSTGTYY255 pKa = 9.5LLKK258 pKa = 10.43IQTEE262 pKa = 4.5DD263 pKa = 3.3NSQSTIKK270 pKa = 10.42FIKK273 pKa = 9.94KK274 pKa = 9.77

Molecular weight: 30.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P3W2K8|A0A3P3W2K8_9FLAO Pseudouridylate synthase OS=Flavobacterium tangerina OX=2488728 GN=EG240_13850 PE=4 SV=1
MM1 pKa = 7.5KK2 pKa = 10.33KK3 pKa = 10.41SILIKK8 pKa = 10.35IFGLVFIFTLCLQSCGSFNNNPQRR32 pKa = 11.84EE33 pKa = 4.02VDD35 pKa = 3.38RR36 pKa = 11.84QQNQNSTIRR45 pKa = 11.84NNTSRR50 pKa = 11.84NDD52 pKa = 3.42SNRR55 pKa = 11.84GSNSNNSRR63 pKa = 11.84EE64 pKa = 4.26NNTSNRR70 pKa = 11.84NNSNRR75 pKa = 11.84NTEE78 pKa = 4.22QKK80 pKa = 10.64SEE82 pKa = 3.87TRR84 pKa = 11.84TSEE87 pKa = 3.58EE88 pKa = 3.91RR89 pKa = 11.84KK90 pKa = 9.94IKK92 pKa = 10.62

Molecular weight: 10.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3128

0

3128

991835

34

2656

317.1

36.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.803 ± 0.042

0.773 ± 0.013

5.384 ± 0.031

6.843 ± 0.048

5.698 ± 0.04

5.774 ± 0.049

1.604 ± 0.022

8.578 ± 0.051

8.169 ± 0.052

9.18 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.158 ± 0.021

6.985 ± 0.049

3.151 ± 0.026

3.564 ± 0.028

3.062 ± 0.03

6.433 ± 0.037

5.626 ± 0.046

6.038 ± 0.04

0.935 ± 0.015

4.242 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski