Cellulomonas composti

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Cellulomonadaceae; Cellulomonas

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3111 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A511JE20|A0A511JE20_9CELL Ribosomal RNA small subunit methyltransferase E OS=Cellulomonas composti OX=266130 GN=CCO02nite_28440 PE=3 SV=1
MM1 pKa = 7.55IGGAPGRR8 pKa = 11.84WGGALLLVVLAVLTSACGGHH28 pKa = 6.74AAATEE33 pKa = 4.13SSNAEE38 pKa = 3.76SVAFSGEE45 pKa = 4.06VPEE48 pKa = 5.42FEE50 pKa = 4.37GPYY53 pKa = 9.85AAEE56 pKa = 3.81FADD59 pKa = 5.12FYY61 pKa = 11.26VHH63 pKa = 5.92STSEE67 pKa = 3.82FVRR70 pKa = 11.84AVLADD75 pKa = 3.73GEE77 pKa = 4.5ITDD80 pKa = 3.85AEE82 pKa = 4.35YY83 pKa = 11.44AEE85 pKa = 4.47MVTRR89 pKa = 11.84LSEE92 pKa = 4.22CLDD95 pKa = 3.87GYY97 pKa = 10.75GVEE100 pKa = 4.59LQSIAPGAGMSTTNAPNGADD120 pKa = 2.89THH122 pKa = 6.51EE123 pKa = 4.97IINTCSVVAGEE134 pKa = 4.19NSIGALRR141 pKa = 11.84DD142 pKa = 3.94FMADD146 pKa = 3.25NPDD149 pKa = 3.73NADD152 pKa = 3.58PTPLIVQCLVDD163 pKa = 4.09SGTVPSDD170 pKa = 3.38YY171 pKa = 10.94GVEE174 pKa = 4.57DD175 pKa = 5.03FDD177 pKa = 4.69TDD179 pKa = 3.7SQSRR183 pKa = 11.84FTDD186 pKa = 3.79LDD188 pKa = 3.32QLDD191 pKa = 4.69PGLSAAFTSCTMDD204 pKa = 3.11VSRR207 pKa = 11.84SMTADD212 pKa = 3.26ASRR215 pKa = 4.06

Molecular weight: 22.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A511JDR3|A0A511JDR3_9CELL Uncharacterized protein OS=Cellulomonas composti OX=266130 GN=CCO02nite_27700 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.61GRR40 pKa = 11.84AEE42 pKa = 3.84LSAA45 pKa = 4.93

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3111

0

3111

1071251

39

3147

344.3

36.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.323 ± 0.065

0.584 ± 0.011

6.665 ± 0.03

5.226 ± 0.041

2.509 ± 0.022

9.234 ± 0.04

2.061 ± 0.022

2.983 ± 0.031

1.489 ± 0.03

10.153 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.496 ± 0.017

1.524 ± 0.024

5.977 ± 0.039

2.665 ± 0.024

7.72 ± 0.056

5.119 ± 0.034

6.59 ± 0.064

10.282 ± 0.046

1.564 ± 0.019

1.835 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski