Achromobacter phage JWX

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Steinhofvirus; Achromobacter virus JWX

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 61 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B5A482|A0A0B5A482_9CAUD Terminase-like family protein OS=Achromobacter phage JWX OX=1589746 GN=JWX_00008 PE=4 SV=1
MM1 pKa = 8.18DD2 pKa = 4.04YY3 pKa = 10.99SIDD6 pKa = 3.23IHH8 pKa = 7.07NLEE11 pKa = 4.43EE12 pKa = 4.29VISYY16 pKa = 10.35ISNNLPCSDD25 pKa = 3.13EE26 pKa = 4.0MQRR29 pKa = 11.84LVSQIEE35 pKa = 3.86LRR37 pKa = 11.84IAEE40 pKa = 4.41LDD42 pKa = 3.72EE43 pKa = 5.93LNDD46 pKa = 3.74LL47 pKa = 4.67

Molecular weight: 5.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4ZZE8|A0A0B4ZZE8_9CAUD Uncharacterized protein OS=Achromobacter phage JWX OX=1589746 GN=JWX_00057 PE=4 SV=1
MM1 pKa = 7.85AMVKK5 pKa = 10.3CITPVGRR12 pKa = 11.84VSFPSVSAASSYY24 pKa = 10.69EE25 pKa = 3.68GSAPKK30 pKa = 10.59YY31 pKa = 8.68SLKK34 pKa = 10.77LAFEE38 pKa = 4.3PEE40 pKa = 3.88KK41 pKa = 11.05VQNLKK46 pKa = 10.2QALHH50 pKa = 5.94YY51 pKa = 9.62EE52 pKa = 4.1QAEE55 pKa = 4.04LLNRR59 pKa = 11.84RR60 pKa = 11.84KK61 pKa = 9.67SAYY64 pKa = 10.14HH65 pKa = 3.85FTIRR69 pKa = 11.84QAVRR73 pKa = 11.84EE74 pKa = 4.05MIRR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84ITARR83 pKa = 11.84LAEE86 pKa = 4.57LLAASAKK93 pKa = 10.13RR94 pKa = 11.84AA95 pKa = 3.44

Molecular weight: 10.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

61

0

61

14194

47

1160

232.7

25.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.511 ± 0.371

0.817 ± 0.121

5.721 ± 0.225

6.735 ± 0.292

3.607 ± 0.195

7.665 ± 0.322

1.761 ± 0.184

4.995 ± 0.174

5.39 ± 0.307

8.412 ± 0.24

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.783 ± 0.16

4.227 ± 0.238

4.946 ± 0.283

4.199 ± 0.283

5.777 ± 0.238

6.073 ± 0.279

5.432 ± 0.288

7.003 ± 0.233

1.86 ± 0.198

3.086 ± 0.161
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski