Saliniradius amylolyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saliniradius

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2945 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S2E1X4|A0A2S2E1X4_9ALTE tRNA pseudouridine synthase D OS=Saliniradius amylolyticus OX=2183582 GN=truD PE=3 SV=1
MM1 pKa = 7.79KK2 pKa = 10.42SITPILAALTLPFVLTGCLNSDD24 pKa = 3.81SDD26 pKa = 4.59PLPEE30 pKa = 4.82PPEE33 pKa = 4.15PPAFSNLRR41 pKa = 11.84VTHH44 pKa = 6.33AVSDD48 pKa = 3.96APTVNVIANGDD59 pKa = 4.05TLSEE63 pKa = 4.22GADD66 pKa = 3.74YY67 pKa = 10.63QASTGWQSVLSDD79 pKa = 3.86TYY81 pKa = 10.32TVEE84 pKa = 4.27VNANLPGGDD93 pKa = 3.55SATVIGPVDD102 pKa = 3.77LTLTGDD108 pKa = 3.31MNYY111 pKa = 10.86DD112 pKa = 3.41VVAVGQVGDD121 pKa = 3.93IEE123 pKa = 4.38PLVLEE128 pKa = 4.29NAEE131 pKa = 4.31TTVTSGNARR140 pKa = 11.84VQILHH145 pKa = 6.81AAANAPMVDD154 pKa = 3.63IYY156 pKa = 10.59VTAPDD161 pKa = 4.11AEE163 pKa = 4.48LASEE167 pKa = 4.07QALATLSFKK176 pKa = 10.72EE177 pKa = 4.1YY178 pKa = 9.37TAQTEE183 pKa = 4.58VAGGDD188 pKa = 3.32YY189 pKa = 10.17RR190 pKa = 11.84VRR192 pKa = 11.84ITPAGADD199 pKa = 3.1TVVFDD204 pKa = 4.87SGTINLADD212 pKa = 4.27GADD215 pKa = 3.73LMVAATDD222 pKa = 3.5NTGAGDD228 pKa = 3.99SPVTLLAVDD237 pKa = 3.97ANGATRR243 pKa = 11.84LWDD246 pKa = 3.7TNTGANLRR254 pKa = 11.84VLHH257 pKa = 6.52GSPDD261 pKa = 3.44APAVDD266 pKa = 3.46VLVNNATMPMHH277 pKa = 5.85YY278 pKa = 9.99QLDD281 pKa = 3.73GLAYY285 pKa = 9.81PNATDD290 pKa = 3.9YY291 pKa = 11.51LAVPADD297 pKa = 3.99EE298 pKa = 5.12LLVDD302 pKa = 4.25VVADD306 pKa = 3.74ADD308 pKa = 3.91NSVVAIDD315 pKa = 4.33DD316 pKa = 3.87AAVAPMQGMAYY327 pKa = 8.59TAIATNTLADD337 pKa = 3.52IQLALLTDD345 pKa = 3.72DD346 pKa = 4.43HH347 pKa = 7.79RR348 pKa = 11.84SIATAAKK355 pKa = 9.92VRR357 pKa = 11.84LIHH360 pKa = 6.13NAPAAGDD367 pKa = 3.29VDD369 pKa = 3.95IYY371 pKa = 10.52VTADD375 pKa = 3.79DD376 pKa = 5.98DD377 pKa = 5.31ISDD380 pKa = 5.09DD381 pKa = 4.48DD382 pKa = 4.34PAFTDD387 pKa = 3.6VPYY390 pKa = 10.91DD391 pKa = 3.59ATNLATTGYY400 pKa = 10.37VEE402 pKa = 4.27LAEE405 pKa = 4.03GTYY408 pKa = 10.73YY409 pKa = 9.31ITITPADD416 pKa = 4.06TKK418 pKa = 10.76TEE420 pKa = 4.68AIGPLMVEE428 pKa = 4.59LNNGDD433 pKa = 3.76VLSAVALEE441 pKa = 4.32ANGGGTPLQAVILDD455 pKa = 3.93DD456 pKa = 4.33SKK458 pKa = 10.97PAPVSLDD465 pKa = 3.02ATQTFEE471 pKa = 4.04VSLDD475 pKa = 3.47GMQEE479 pKa = 3.94VPAVDD484 pKa = 3.85TAATAAATVLLDD496 pKa = 3.6EE497 pKa = 5.44DD498 pKa = 4.66DD499 pKa = 4.66RR500 pKa = 11.84LFSVTVDD507 pKa = 3.21TSAVDD512 pKa = 3.39NVTGVHH518 pKa = 4.92VHH520 pKa = 7.22DD521 pKa = 5.15GNIGRR526 pKa = 11.84NGPVAFPLQASGDD539 pKa = 3.8DD540 pKa = 4.3TYY542 pKa = 11.62TLPATNLLDD551 pKa = 4.22PMIEE555 pKa = 3.97ALKK558 pKa = 10.59SGEE561 pKa = 3.88WYY563 pKa = 10.22INVHH567 pKa = 5.27TEE569 pKa = 3.88ANPSGEE575 pKa = 4.01VRR577 pKa = 11.84GQIVPEE583 pKa = 4.05TMAVVTFPLSGSQEE597 pKa = 4.35VPSVTTDD604 pKa = 2.63AMGYY608 pKa = 10.59GYY610 pKa = 9.02ATLDD614 pKa = 3.55TTTLAVDD621 pKa = 4.09LVAVTMGVEE630 pKa = 4.34DD631 pKa = 3.3ATMAHH636 pKa = 6.57IHH638 pKa = 5.92TGYY641 pKa = 10.6AGEE644 pKa = 4.34NGPVYY649 pKa = 9.8VTLEE653 pKa = 3.81QSMDD657 pKa = 3.82DD658 pKa = 3.59ANVWMTPAGAMIDD671 pKa = 3.54ATNAARR677 pKa = 11.84LVEE680 pKa = 4.37GGHH683 pKa = 5.74YY684 pKa = 10.93VNIHH688 pKa = 5.45TPANPSGEE696 pKa = 4.24LRR698 pKa = 11.84GQITPDD704 pKa = 3.38NIEE707 pKa = 4.21VYY709 pKa = 10.57GVTATGDD716 pKa = 3.59QEE718 pKa = 4.69VPAVDD723 pKa = 3.78TNAMGEE729 pKa = 4.25GAITLNTSTMTIKK742 pKa = 10.87AIINVMDD749 pKa = 4.07ISPNAAHH756 pKa = 7.0IHH758 pKa = 5.03QGAVGEE764 pKa = 4.21NGGVVIGLTNPDD776 pKa = 3.33AGLWTLDD783 pKa = 3.25ATLTEE788 pKa = 4.16AQMALMQAEE797 pKa = 4.01GLYY800 pKa = 10.82TNFHH804 pKa = 6.36TDD806 pKa = 3.12AFPSGEE812 pKa = 3.71IRR814 pKa = 11.84GQITLGFEE822 pKa = 4.07

Molecular weight: 85.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S2E7F6|A0A2S2E7F6_9ALTE OMP_b-brl domain-containing protein OS=Saliniradius amylolyticus OX=2183582 GN=HMF8227_02709 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNIKK11 pKa = 10.11RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84SHH16 pKa = 6.18GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.42NGRR28 pKa = 11.84KK29 pKa = 8.55VLKK32 pKa = 10.18SRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.31GRR39 pKa = 11.84ARR41 pKa = 11.84LAAA44 pKa = 4.44

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2945

0

2945

972597

30

1835

330.3

36.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.898 ± 0.046

0.945 ± 0.017

5.918 ± 0.039

6.405 ± 0.046

3.831 ± 0.03

7.162 ± 0.038

2.397 ± 0.021

5.357 ± 0.032

4.535 ± 0.039

10.685 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.567 ± 0.022

3.723 ± 0.027

4.242 ± 0.03

5.368 ± 0.043

5.376 ± 0.036

6.203 ± 0.034

5.038 ± 0.03

6.946 ± 0.039

1.34 ± 0.019

3.065 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski