Paremcibacter congregatus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Emcibacterales; Emcibacteraceae; Paremcibacter

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3533 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2G4YRT2|A0A2G4YRT2_9PROT Uncharacterized protein OS=Paremcibacter congregatus OX=2043170 GN=CRD36_09960 PE=4 SV=1
MM1 pKa = 7.08SQEE4 pKa = 4.55DD5 pKa = 4.54DD6 pKa = 3.4IASAMAYY13 pKa = 8.07VTDD16 pKa = 3.92VKK18 pKa = 10.94FEE20 pKa = 3.95YY21 pKa = 10.81AAMINTLYY29 pKa = 10.38YY30 pKa = 10.46LCEE33 pKa = 3.96EE34 pKa = 4.74ADD36 pKa = 4.2SIGLPDD42 pKa = 3.62VSLHH46 pKa = 5.97LKK48 pKa = 9.88IAIDD52 pKa = 3.6EE53 pKa = 4.58LKK55 pKa = 11.03AQGPRR60 pKa = 11.84DD61 pKa = 3.47ASQDD65 pKa = 3.59DD66 pKa = 4.09EE67 pKa = 5.39EE68 pKa = 4.91ITSIWPSAPTEE79 pKa = 3.96

Molecular weight: 8.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2G4YWF6|A0A2G4YWF6_9PROT Uncharacterized protein OS=Paremcibacter congregatus OX=2043170 GN=CRD36_01995 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84SATVGGRR28 pKa = 11.84RR29 pKa = 11.84VLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.97GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3533

0

3533

1223468

21

4919

346.3

38.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.382 ± 0.04

0.914 ± 0.014

6.203 ± 0.031

5.896 ± 0.039

4.036 ± 0.029

7.864 ± 0.079

2.204 ± 0.021

6.243 ± 0.035

4.938 ± 0.034

9.794 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.753 ± 0.024

3.726 ± 0.029

4.348 ± 0.027

3.656 ± 0.022

5.374 ± 0.034

5.983 ± 0.035

5.722 ± 0.036

6.742 ± 0.032

1.176 ± 0.015

3.048 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski