Acetobacter peroxydans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria;

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2457 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y3TW46|A0A4Y3TW46_9PROT Transcriptional regulator OS=Acetobacter peroxydans OX=104098 GN=APE01nite_24130 PE=4 SV=1
MM1 pKa = 7.4SVFNALSTAVSGINAQSTAFTNLSNNIANSQTVGYY36 pKa = 9.73KK37 pKa = 9.3ATTTAFQDD45 pKa = 4.29FVAGAGGNSASADD58 pKa = 3.19ISDD61 pKa = 3.73SVAAVTVQHH70 pKa = 6.61VDD72 pKa = 3.23NQGTSSTSTDD82 pKa = 3.16ALATSISGNGLFVVSKK98 pKa = 8.93GTTSGGQTYY107 pKa = 7.16YY108 pKa = 10.29TRR110 pKa = 11.84NGEE113 pKa = 4.17VYY115 pKa = 9.79EE116 pKa = 4.24NKK118 pKa = 10.34AGYY121 pKa = 9.43LVNTSGYY128 pKa = 8.12YY129 pKa = 10.29LEE131 pKa = 6.37GYY133 pKa = 8.6MVDD136 pKa = 4.0PSTGTLGTTLTQLNVSNVTFKK157 pKa = 9.98PTEE160 pKa = 4.22TTTLTSTSTVGTATGTNQTYY180 pKa = 7.15TTAPTTVYY188 pKa = 10.5DD189 pKa = 3.97SSGTAHH195 pKa = 6.89QIGLVWTQSTSDD207 pKa = 3.26TSKK210 pKa = 8.4WTVQAYY216 pKa = 9.86DD217 pKa = 3.69ADD219 pKa = 4.15GGGAISDD226 pKa = 4.52ASPSPYY232 pKa = 9.72IVTFDD237 pKa = 3.54SSTGAMTSVTDD248 pKa = 3.33ATGAVVANTTGTAAEE263 pKa = 4.13IPITATYY270 pKa = 10.49NGVAQTINLDD280 pKa = 3.56LGSIGSTSGTVVATAKK296 pKa = 10.51SGTPSTSQGTSLVVSGGSLAMDD318 pKa = 3.67SGGGAVNIGAQTGTNDD334 pKa = 3.39TYY336 pKa = 9.62TTTPLKK342 pKa = 10.72LSDD345 pKa = 3.65GSYY348 pKa = 11.21VSAVWTKK355 pKa = 11.14NPTTAANVNSEE366 pKa = 4.23QTWTVKK372 pKa = 10.66LVDD375 pKa = 4.81PYY377 pKa = 11.78SSATSDD383 pKa = 3.25STTAQVTFKK392 pKa = 11.14ADD394 pKa = 3.53GTIDD398 pKa = 3.95TINGSSTGSISFTDD412 pKa = 3.39SSGTTQTLNLTTSSVKK428 pKa = 10.53LGSSSPYY435 pKa = 9.5TDD437 pKa = 3.19TTAVTSDD444 pKa = 3.96SIATGTYY451 pKa = 8.67EE452 pKa = 4.02GAEE455 pKa = 4.1ITSDD459 pKa = 3.25GSVMAKK465 pKa = 10.45FSTGTQLIGKK475 pKa = 8.56VALANFANVNGLEE488 pKa = 4.24GVDD491 pKa = 3.54GQAYY495 pKa = 9.72VATTNSGNAQIGVSGQNGTGTLSVGYY521 pKa = 9.77VEE523 pKa = 6.33SSTTDD528 pKa = 3.22LTKK531 pKa = 10.76DD532 pKa = 3.4LSSLIVAQQAYY543 pKa = 5.96TANTKK548 pKa = 9.92VVTSANTMLQATIAMIQQ565 pKa = 2.99

Molecular weight: 56.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y3TVP7|A0A4Y3TVP7_9PROT Uncharacterized protein OS=Acetobacter peroxydans OX=104098 GN=APE01nite_22830 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.32VIANRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.46GRR39 pKa = 11.84KK40 pKa = 8.72RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2457

0

2457

798204

43

1710

324.9

35.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.45 ± 0.072

1.096 ± 0.017

5.283 ± 0.034

5.349 ± 0.052

3.394 ± 0.029

8.37 ± 0.045

2.353 ± 0.022

4.539 ± 0.032

2.653 ± 0.042

10.635 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.596 ± 0.021

2.534 ± 0.029

5.573 ± 0.038

3.692 ± 0.031

7.226 ± 0.046

5.597 ± 0.038

5.744 ± 0.039

7.404 ± 0.043

1.358 ± 0.02

2.152 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski