Silvanigrella aquatica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Oligoflexia; Silvanigrellales; Silvanigrellaceae; Silvanigrella

Average proteome isoelectric point is 7.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2865 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L4CXN0|A0A1L4CXN0_9PROT Uncharacterized protein OS=Silvanigrella aquatica OX=1915309 GN=AXG55_01630 PE=4 SV=1
MM1 pKa = 6.55NQEE4 pKa = 3.79YY5 pKa = 10.82GNWGWEE11 pKa = 3.66IFVYY15 pKa = 10.23PSYY18 pKa = 10.84IVVAIILLSYY28 pKa = 10.05IGYY31 pKa = 10.17SYY33 pKa = 11.21FSLINSLKK41 pKa = 10.39DD42 pKa = 3.28MRR44 pKa = 11.84NEE46 pKa = 4.56GYY48 pKa = 10.39FEE50 pKa = 5.38NNDD53 pKa = 3.32DD54 pKa = 4.45SNFNFSDD61 pKa = 3.52KK62 pKa = 10.97SSEE65 pKa = 3.96SDD67 pKa = 3.32LSGKK71 pKa = 10.68GSDD74 pKa = 3.48SS75 pKa = 3.31

Molecular weight: 8.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L4CXD5|A0A1L4CXD5_9PROT Uncharacterized protein OS=Silvanigrella aquatica OX=1915309 GN=AXG55_01150 PE=4 SV=1
MM1 pKa = 7.24VVRR4 pKa = 11.84KK5 pKa = 9.29RR6 pKa = 11.84KK7 pKa = 9.53KK8 pKa = 10.32AGASKK13 pKa = 10.4AKK15 pKa = 10.3KK16 pKa = 8.53VTTGKK21 pKa = 10.12KK22 pKa = 8.91RR23 pKa = 11.84RR24 pKa = 11.84KK25 pKa = 8.09SAKK28 pKa = 9.94AKK30 pKa = 8.83VAKK33 pKa = 9.83KK34 pKa = 10.46RR35 pKa = 11.84KK36 pKa = 5.37TTAKK40 pKa = 9.83KK41 pKa = 8.28ATRR44 pKa = 11.84RR45 pKa = 11.84KK46 pKa = 7.61TKK48 pKa = 10.47AKK50 pKa = 9.1RR51 pKa = 11.84TTKK54 pKa = 10.57KK55 pKa = 10.38AGAPKK60 pKa = 9.94KK61 pKa = 10.33RR62 pKa = 11.84KK63 pKa = 7.33TKK65 pKa = 10.34RR66 pKa = 11.84KK67 pKa = 7.23TVGKK71 pKa = 9.64RR72 pKa = 11.84KK73 pKa = 7.78TVGKK77 pKa = 10.2RR78 pKa = 11.84KK79 pKa = 7.62TAGKK83 pKa = 10.11RR84 pKa = 11.84KK85 pKa = 8.0TSAKK89 pKa = 9.44KK90 pKa = 10.18RR91 pKa = 11.84KK92 pKa = 9.53SKK94 pKa = 10.75LSLVAKK100 pKa = 6.88PTRR103 pKa = 11.84KK104 pKa = 9.7KK105 pKa = 9.3RR106 pKa = 11.84TKK108 pKa = 9.93KK109 pKa = 9.58ASKK112 pKa = 10.28RR113 pKa = 11.84KK114 pKa = 8.05ATAKK118 pKa = 10.25KK119 pKa = 8.88VVARR123 pKa = 11.84KK124 pKa = 9.92SSEE127 pKa = 3.76KK128 pKa = 10.13HH129 pKa = 5.35LKK131 pKa = 9.4KK132 pKa = 10.75AGG134 pKa = 3.41

Molecular weight: 15.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2865

0

2865

1001728

37

4281

349.6

39.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.116 ± 0.064

1.173 ± 0.016

4.616 ± 0.032

6.411 ± 0.054

5.399 ± 0.048

5.539 ± 0.048

1.96 ± 0.025

8.755 ± 0.056

8.124 ± 0.07

9.729 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.13 ± 0.023

6.665 ± 0.061

3.582 ± 0.033

3.54 ± 0.026

3.438 ± 0.031

7.836 ± 0.067

4.909 ± 0.08

5.417 ± 0.04

0.991 ± 0.015

3.669 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski