Zetapapillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Zetapapillomavirus

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8BE76|Q8BE76_9PAPI Protein E6 OS=Zetapapillomavirus 1 OX=333919 GN=E6 PE=3 SV=1
MM1 pKa = 7.66IGNGSPSLRR10 pKa = 11.84EE11 pKa = 3.71IVLSEE16 pKa = 4.4LPQSLADD23 pKa = 3.64PAEE26 pKa = 4.43AEE28 pKa = 4.24SEE30 pKa = 4.2EE31 pKa = 4.48EE32 pKa = 4.04EE33 pKa = 5.03VEE35 pKa = 4.29VEE37 pKa = 3.95LDD39 pKa = 3.34AVRR42 pKa = 11.84PQAPYY47 pKa = 10.4AVCTVCCRR55 pKa = 11.84CGEE58 pKa = 4.17KK59 pKa = 10.62VGLCVLATDD68 pKa = 4.21EE69 pKa = 5.31GIHH72 pKa = 6.0GLEE75 pKa = 3.84EE76 pKa = 4.25LLFEE80 pKa = 4.98ALQLFCAQCAPPIGRR95 pKa = 11.84HH96 pKa = 4.7GRR98 pKa = 3.45

Molecular weight: 10.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8BE74|Q8BE74_9PAPI Replication protein E1 OS=Zetapapillomavirus 1 OX=333919 GN=E1 PE=3 SV=1
MM1 pKa = 7.42MEE3 pKa = 4.48TLRR6 pKa = 11.84QRR8 pKa = 11.84LDD10 pKa = 3.21AVQEE14 pKa = 4.0KK15 pKa = 10.52LMNLLEE21 pKa = 4.72EE22 pKa = 4.9GSSDD26 pKa = 4.07LSSQICYY33 pKa = 7.63WQAVRR38 pKa = 11.84KK39 pKa = 9.68EE40 pKa = 4.02NVLLYY45 pKa = 9.07YY46 pKa = 10.6ARR48 pKa = 11.84EE49 pKa = 4.09KK50 pKa = 10.94GLSRR54 pKa = 11.84LGLQMVPHH62 pKa = 6.81KK63 pKa = 10.68AVSQSQAKK71 pKa = 8.67QAIHH75 pKa = 6.38MEE77 pKa = 4.89LILLSLQGSSYY88 pKa = 9.39EE89 pKa = 4.03QEE91 pKa = 3.72PWTLSDD97 pKa = 4.25CSWEE101 pKa = 4.01RR102 pKa = 11.84WLQAPINCLKK112 pKa = 9.89KK113 pKa = 10.59DD114 pKa = 3.66PVIVEE119 pKa = 3.73VVYY122 pKa = 11.0DD123 pKa = 4.07GNSEE127 pKa = 3.9NANWYY132 pKa = 6.44TLWGLIYY139 pKa = 10.13YY140 pKa = 7.53QTFEE144 pKa = 4.39GDD146 pKa = 3.35WMCTRR151 pKa = 11.84GQCDD155 pKa = 3.0HH156 pKa = 6.96SGLYY160 pKa = 10.06YY161 pKa = 10.53EE162 pKa = 4.89EE163 pKa = 5.05EE164 pKa = 3.96GHH166 pKa = 5.99KK167 pKa = 9.97RR168 pKa = 11.84YY169 pKa = 9.47YY170 pKa = 10.48VHH172 pKa = 7.48FIDD175 pKa = 5.56DD176 pKa = 3.59AARR179 pKa = 11.84YY180 pKa = 9.13SKK182 pKa = 9.66TRR184 pKa = 11.84TWEE187 pKa = 3.86VRR189 pKa = 11.84CRR191 pKa = 11.84NQIYY195 pKa = 10.2LPSIPVTSTPPQSPSHH211 pKa = 6.77IDD213 pKa = 3.6LPDD216 pKa = 3.71GAAGGGPNQSPRR228 pKa = 11.84PGALAVSPQEE238 pKa = 4.14PPKK241 pKa = 10.55KK242 pKa = 9.74RR243 pKa = 11.84YY244 pKa = 9.44RR245 pKa = 11.84SPADD249 pKa = 3.41TVSSSRR255 pKa = 11.84LSGGLRR261 pKa = 11.84CPADD265 pKa = 2.85WCRR268 pKa = 11.84RR269 pKa = 11.84KK270 pKa = 9.89LQRR273 pKa = 11.84TSAPTWVPPSVSEE286 pKa = 4.32VPEE289 pKa = 4.16APEE292 pKa = 4.36GSVSEE297 pKa = 4.37TGGASPGVDD306 pKa = 2.73STTGRR311 pKa = 11.84GNDD314 pKa = 3.76PAPVPLEE321 pKa = 3.76AAFAPIVIFQGGTNQCKK338 pKa = 9.99CYY340 pKa = 9.91RR341 pKa = 11.84WRR343 pKa = 11.84LKK345 pKa = 10.08KK346 pKa = 9.96RR347 pKa = 11.84HH348 pKa = 6.22RR349 pKa = 11.84SLFVAITTTYY359 pKa = 10.23FWTGDD364 pKa = 3.1KK365 pKa = 10.92GGQRR369 pKa = 11.84VGNARR374 pKa = 11.84LMVTFSSDD382 pKa = 2.98LQRR385 pKa = 11.84RR386 pKa = 11.84LLLATVPPPRR396 pKa = 11.84GVTATSFTLTPSS408 pKa = 3.08

Molecular weight: 45.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2248

98

620

374.7

41.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.45 ± 0.488

2.224 ± 0.704

5.694 ± 0.568

6.361 ± 0.636

3.826 ± 0.572

7.829 ± 1.116

2.002 ± 0.113

3.692 ± 0.273

3.915 ± 0.734

8.763 ± 0.464

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.957 ± 0.226

3.781 ± 0.684

7.073 ± 0.708

4.181 ± 0.593

6.717 ± 0.362

7.473 ± 0.724

5.738 ± 0.53

7.251 ± 0.475

1.957 ± 0.358

3.114 ± 0.253
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski