Albidovulum inexpectatum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Albidovulum

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2911 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S5JJ32|A0A2S5JJ32_9RHOB Branched-chain amino acid transport system ATP-binding protein OS=Albidovulum inexpectatum OX=196587 GN=LV82_00723 PE=4 SV=1
MM1 pKa = 7.41MSRR4 pKa = 11.84KK5 pKa = 9.33AALSAMAAAAFLPLAVNAQDD25 pKa = 4.39VNIEE29 pKa = 4.13TLGVLEE35 pKa = 4.99LEE37 pKa = 4.45YY38 pKa = 10.98LSGDD42 pKa = 3.76GADD45 pKa = 3.55EE46 pKa = 4.02TLVFGDD52 pKa = 3.62VSLSVDD58 pKa = 3.43PGLGQTGLGFDD69 pKa = 3.62GGLYY73 pKa = 10.85GLDD76 pKa = 3.12GDD78 pKa = 4.4GFEE81 pKa = 5.16GEE83 pKa = 4.94LIAFGALTYY92 pKa = 8.3RR93 pKa = 11.84TSYY96 pKa = 11.07GKK98 pKa = 10.54FSFGVPRR105 pKa = 11.84SAAGTYY111 pKa = 10.57SRR113 pKa = 11.84MPEE116 pKa = 3.77IGGSQYY122 pKa = 10.48FAAEE126 pKa = 4.2TQVFTDD132 pKa = 5.05GIVTYY137 pKa = 10.3AYY139 pKa = 10.55LLDD142 pKa = 4.34GEE144 pKa = 4.74TPIGLRR150 pKa = 11.84YY151 pKa = 10.58DD152 pKa = 3.64GDD154 pKa = 3.76YY155 pKa = 11.29GALKK159 pKa = 10.49GAVSLHH165 pKa = 6.4RR166 pKa = 11.84FDD168 pKa = 6.18DD169 pKa = 3.89SDD171 pKa = 4.21VDD173 pKa = 3.86VADD176 pKa = 3.74IAVSFDD182 pKa = 2.97TGRR185 pKa = 11.84FFVNGAYY192 pKa = 10.08EE193 pKa = 4.62SVWLPSTSVQSTLHH207 pKa = 7.32LEE209 pKa = 4.15IGATGANYY217 pKa = 9.03EE218 pKa = 4.08AGIGYY223 pKa = 7.54TVGSNLVDD231 pKa = 4.09DD232 pKa = 6.01ALMAWATYY240 pKa = 9.83QPNSAVAVTASLLDD254 pKa = 3.37IDD256 pKa = 4.82GLSAIYY262 pKa = 9.97GLSGTYY268 pKa = 10.4SFASGAYY275 pKa = 8.7LQGGILDD282 pKa = 4.25SSDD285 pKa = 3.06ADD287 pKa = 3.61AVFDD291 pKa = 5.01LSLGYY296 pKa = 10.66KK297 pKa = 9.82FF298 pKa = 5.19

Molecular weight: 31.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S5JG40|A0A2S5JG40_9RHOB Pyruvate orthophosphate dikinase OS=Albidovulum inexpectatum OX=196587 GN=LV82_02203 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2911

0

2911

916633

39

1512

314.9

34.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.668 ± 0.062

0.87 ± 0.014

5.981 ± 0.032

6.029 ± 0.048

3.512 ± 0.027

8.612 ± 0.043

2.076 ± 0.02

5.347 ± 0.032

2.689 ± 0.032

10.105 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.659 ± 0.02

2.311 ± 0.021

5.43 ± 0.036

3.025 ± 0.021

8.217 ± 0.047

4.685 ± 0.029

4.967 ± 0.027

7.28 ± 0.038

1.474 ± 0.02

2.062 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski