Trypanosoma rangeli SC58

Taxonomy: cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Herpetosoma; Trypanosoma rangeli

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7365 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A061J7B2|A0A061J7B2_TRYRA Ubiquitinyl hydrolase 1 OS=Trypanosoma rangeli SC58 OX=429131 GN=TRSC58_02040 PE=4 SV=1
MM1 pKa = 7.96DD2 pKa = 5.76GDD4 pKa = 4.09FLLEE8 pKa = 3.91RR9 pKa = 11.84LDD11 pKa = 4.12AFFSEE16 pKa = 4.88GANTDD21 pKa = 3.61AIGNFISEE29 pKa = 4.55EE30 pKa = 3.96QGVMQLLGHH39 pKa = 5.73STDD42 pKa = 3.72TQEE45 pKa = 4.88SLQLYY50 pKa = 10.68ALFKK54 pKa = 10.61KK55 pKa = 10.04YY56 pKa = 10.61AAVVDD61 pKa = 4.41ALLHH65 pKa = 5.18MFVARR70 pKa = 11.84EE71 pKa = 4.1TEE73 pKa = 4.13AGCPIDD79 pKa = 5.58LEE81 pKa = 4.16QLAAAVMKK89 pKa = 10.02EE90 pKa = 3.24WRR92 pKa = 11.84QEE94 pKa = 3.54HH95 pKa = 7.23DD96 pKa = 3.44YY97 pKa = 11.38CRR99 pKa = 11.84YY100 pKa = 10.35LCTAYY105 pKa = 10.77VAGALDD111 pKa = 3.91FEE113 pKa = 4.99SFKK116 pKa = 11.16QLVADD121 pKa = 4.14VNAMTTYY128 pKa = 10.46PVGAEE133 pKa = 4.17LSDD136 pKa = 3.56EE137 pKa = 4.61DD138 pKa = 4.52SVSEE142 pKa = 3.97ATPEE146 pKa = 4.12EE147 pKa = 4.49EE148 pKa = 5.47DD149 pKa = 3.51SS150 pKa = 3.7

Molecular weight: 16.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A061J7A0|A0A061J7A0_TRYRA Trimethylguanosine synthase OS=Trypanosoma rangeli SC58 OX=429131 GN=TRSC58_01512 PE=4 SV=1
MM1 pKa = 7.86ISIKK5 pKa = 9.68TGKK8 pKa = 9.75KK9 pKa = 9.07PRR11 pKa = 11.84AKK13 pKa = 9.99KK14 pKa = 10.22VKK16 pKa = 9.42NLKK19 pKa = 10.42GPGGRR24 pKa = 11.84GAAKK28 pKa = 10.21GALQQRR34 pKa = 11.84GARR37 pKa = 11.84GVPGQKK43 pKa = 9.99GAAQRR48 pKa = 11.84GGAQKK53 pKa = 11.18GNTRR57 pKa = 11.84RR58 pKa = 11.84PQQQQQKK65 pKa = 9.02QRR67 pKa = 11.84PQQKK71 pKa = 9.4QSQQRR76 pKa = 11.84GARR79 pKa = 11.84PSRR82 pKa = 11.84NEE84 pKa = 3.4EE85 pKa = 3.53GGRR88 pKa = 11.84QQRR91 pKa = 11.84GGNPASQARR100 pKa = 11.84QQQGRR105 pKa = 11.84NAPRR109 pKa = 11.84PQKK112 pKa = 10.91AA113 pKa = 2.92

Molecular weight: 12.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7365

0

7365

3404951

51

4449

462.3

51.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.237 ± 0.031

2.125 ± 0.013

4.785 ± 0.016

6.849 ± 0.029

3.826 ± 0.017

6.47 ± 0.019

2.675 ± 0.012

3.633 ± 0.019

4.11 ± 0.024

10.109 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.499 ± 0.011

3.122 ± 0.014

4.916 ± 0.02

3.953 ± 0.02

7.36 ± 0.024

7.382 ± 0.026

5.583 ± 0.018

7.656 ± 0.02

1.201 ± 0.009

2.507 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski