Amino acid dipepetide frequency for Staphylococcus sp. DORA_6_22

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.523AlaAla: 3.523 ± 0.111
0.457AlaCys: 0.457 ± 0.037
2.621AlaAsp: 2.621 ± 0.079
3.068AlaGlu: 3.068 ± 0.101
2.787AlaPhe: 2.787 ± 0.097
3.845AlaGly: 3.845 ± 0.129
1.391AlaHis: 1.391 ± 0.062
6.029AlaIle: 6.029 ± 0.123
4.394AlaLys: 4.394 ± 0.109
6.123AlaLeu: 6.123 ± 0.138
1.692AlaMet: 1.692 ± 0.066
2.872AlaAsn: 2.872 ± 0.102
1.605AlaPro: 1.605 ± 0.061
2.546AlaGln: 2.546 ± 0.087
2.144AlaArg: 2.144 ± 0.08
3.679AlaSer: 3.679 ± 0.104
3.376AlaThr: 3.376 ± 0.084
3.696AlaVal: 3.696 ± 0.122
0.34AlaTrp: 0.34 ± 0.033
2.077AlaTyr: 2.077 ± 0.076
0.005AlaXaa: 0.005 ± 0.003
Cys
0.308CysAla: 0.308 ± 0.027
0.075CysCys: 0.075 ± 0.016
0.348CysAsp: 0.348 ± 0.027
0.365CysGlu: 0.365 ± 0.03
0.266CysPhe: 0.266 ± 0.028
0.609CysGly: 0.609 ± 0.042
0.179CysHis: 0.179 ± 0.021
0.527CysIle: 0.527 ± 0.036
0.358CysLys: 0.358 ± 0.034
0.658CysLeu: 0.658 ± 0.042
0.154CysMet: 0.154 ± 0.019
0.301CysAsn: 0.301 ± 0.026
0.293CysPro: 0.293 ± 0.03
0.186CysGln: 0.186 ± 0.022
0.191CysArg: 0.191 ± 0.022
0.452CysSer: 0.452 ± 0.037
0.427CysThr: 0.427 ± 0.033
0.375CysVal: 0.375 ± 0.031
0.055CysTrp: 0.055 ± 0.013
0.313CysTyr: 0.313 ± 0.028
0.002CysXaa: 0.002 ± 0.002
Asp
3.279AspAla: 3.279 ± 0.089
0.325AspCys: 0.325 ± 0.029
3.361AspAsp: 3.361 ± 0.105
4.628AspGlu: 4.628 ± 0.124
2.536AspPhe: 2.536 ± 0.068
3.028AspGly: 3.028 ± 0.101
1.222AspHis: 1.222 ± 0.063
5.555AspIle: 5.555 ± 0.124
4.541AspLys: 4.541 ± 0.106
4.879AspLeu: 4.879 ± 0.121
1.54AspMet: 1.54 ± 0.059
2.956AspAsn: 2.956 ± 0.109
1.312AspPro: 1.312 ± 0.058
2.017AspGln: 2.017 ± 0.082
1.821AspArg: 1.821 ± 0.07
3.063AspSer: 3.063 ± 0.111
2.964AspThr: 2.964 ± 0.09
3.855AspVal: 3.855 ± 0.096
0.514AspTrp: 0.514 ± 0.037
2.623AspTyr: 2.623 ± 0.082
0.01AspXaa: 0.01 ± 0.005
Glu
4.074GluAla: 4.074 ± 0.116
0.288GluCys: 0.288 ± 0.032
4.047GluAsp: 4.047 ± 0.125
4.894GluGlu: 4.894 ± 0.136
2.407GluPhe: 2.407 ± 0.077
3.572GluGly: 3.572 ± 0.097
1.635GluHis: 1.635 ± 0.065
5.41GluIle: 5.41 ± 0.123
5.309GluLys: 5.309 ± 0.119
6.223GluLeu: 6.223 ± 0.152
1.972GluMet: 1.972 ± 0.07
4.081GluAsn: 4.081 ± 0.097
1.657GluPro: 1.657 ± 0.067
3.075GluGln: 3.075 ± 0.091
3.018GluArg: 3.018 ± 0.101
3.751GluSer: 3.751 ± 0.104
3.535GluThr: 3.535 ± 0.096
4.303GluVal: 4.303 ± 0.117
0.529GluTrp: 0.529 ± 0.032
2.313GluTyr: 2.313 ± 0.076
0.007GluXaa: 0.007 ± 0.004
Phe
2.415PheAla: 2.415 ± 0.08
0.33PheCys: 0.33 ± 0.023
2.713PheAsp: 2.713 ± 0.083
2.889PheGlu: 2.889 ± 0.092
2.074PhePhe: 2.074 ± 0.081
3.108PheGly: 3.108 ± 0.088
0.832PheHis: 0.832 ± 0.049
4.799PheIle: 4.799 ± 0.141
3.731PheLys: 3.731 ± 0.11
3.811PheLeu: 3.811 ± 0.113
1.078PheMet: 1.078 ± 0.049
3.08PheAsn: 3.08 ± 0.09
1.195PhePro: 1.195 ± 0.055
1.366PheGln: 1.366 ± 0.059
1.245PheArg: 1.245 ± 0.051
2.889PheSer: 2.889 ± 0.089
2.536PheThr: 2.536 ± 0.087
3.053PheVal: 3.053 ± 0.1
0.353PheTrp: 0.353 ± 0.029
1.707PheTyr: 1.707 ± 0.074
0.007PheXaa: 0.007 ± 0.004
Gly
4.196GlyAla: 4.196 ± 0.127
0.519GlyCys: 0.519 ± 0.037
3.058GlyAsp: 3.058 ± 0.105
3.488GlyGlu: 3.488 ± 0.094
3.142GlyPhe: 3.142 ± 0.102
4.27GlyGly: 4.27 ± 0.113
1.563GlyHis: 1.563 ± 0.066
5.723GlyIle: 5.723 ± 0.146
4.394GlyLys: 4.394 ± 0.114
5.786GlyLeu: 5.786 ± 0.157
1.754GlyMet: 1.754 ± 0.064
2.67GlyAsn: 2.67 ± 0.093
1.664GlyPro: 1.664 ± 0.074
2.278GlyGln: 2.278 ± 0.079
2.231GlyArg: 2.231 ± 0.092
3.403GlySer: 3.403 ± 0.091
3.537GlyThr: 3.537 ± 0.115
4.39GlyVal: 4.39 ± 0.11
0.522GlyTrp: 0.522 ± 0.042
2.772GlyTyr: 2.772 ± 0.074
0.025GlyXaa: 0.025 ± 0.008
His
1.379HisAla: 1.379 ± 0.052
0.171HisCys: 0.171 ± 0.021
1.322HisAsp: 1.322 ± 0.069
1.257HisGlu: 1.257 ± 0.056
1.336HisPhe: 1.336 ± 0.059
1.406HisGly: 1.406 ± 0.059
0.929HisHis: 0.929 ± 0.051
2.149HisIle: 2.149 ± 0.069
1.379HisLys: 1.379 ± 0.057
2.541HisLeu: 2.541 ± 0.083
0.661HisMet: 0.661 ± 0.041
1.113HisAsn: 1.113 ± 0.054
1.096HisPro: 1.096 ± 0.052
1.317HisGln: 1.317 ± 0.061
0.964HisArg: 0.964 ± 0.049
1.473HisSer: 1.473 ± 0.059
1.264HisThr: 1.264 ± 0.054
1.61HisVal: 1.61 ± 0.061
0.211HisTrp: 0.211 ± 0.021
1.014HisTyr: 1.014 ± 0.049
0.007HisXaa: 0.007 ± 0.004
Ile
5.895IleAla: 5.895 ± 0.127
0.663IleCys: 0.663 ± 0.039
5.279IleAsp: 5.279 ± 0.122
6.133IleGlu: 6.133 ± 0.123
3.965IlePhe: 3.965 ± 0.125
6.064IleGly: 6.064 ± 0.146
1.965IleHis: 1.965 ± 0.075
7.967IleIle: 7.967 ± 0.182
6.767IleLys: 6.767 ± 0.133
7.887IleLeu: 7.887 ± 0.18
2.099IleMet: 2.099 ± 0.083
5.073IleAsn: 5.073 ± 0.12
3.152IlePro: 3.152 ± 0.094
3.366IleGln: 3.366 ± 0.096
2.71IleArg: 2.71 ± 0.084
5.95IleSer: 5.95 ± 0.137
4.747IleThr: 4.747 ± 0.12
6.297IleVal: 6.297 ± 0.15
0.497IleTrp: 0.497 ± 0.035
3.13IleTyr: 3.13 ± 0.098
0.007IleXaa: 0.007 ± 0.005
Lys
4.367LysAla: 4.367 ± 0.115
0.313LysCys: 0.313 ± 0.026
5.227LysAsp: 5.227 ± 0.122
6.394LysGlu: 6.394 ± 0.148
2.407LysPhe: 2.407 ± 0.078
4.452LysGly: 4.452 ± 0.121
1.915LysHis: 1.915 ± 0.075
5.637LysIle: 5.637 ± 0.134
6.208LysLys: 6.208 ± 0.169
6.029LysLeu: 6.029 ± 0.134
2.248LysMet: 2.248 ± 0.076
4.705LysAsn: 4.705 ± 0.124
2.223LysPro: 2.223 ± 0.071
3.649LysGln: 3.649 ± 0.11
3.152LysArg: 3.152 ± 0.093
4.305LysSer: 4.305 ± 0.121
3.763LysThr: 3.763 ± 0.106
4.914LysVal: 4.914 ± 0.118
0.611LysTrp: 0.611 ± 0.041
3.133LysTyr: 3.133 ± 0.101
0.01LysXaa: 0.01 ± 0.004
Leu
5.599LeuAla: 5.599 ± 0.138
0.656LeuCys: 0.656 ± 0.044
5.008LeuAsp: 5.008 ± 0.122
5.632LeuGlu: 5.632 ± 0.123
4.514LeuPhe: 4.514 ± 0.129
5.791LeuGly: 5.791 ± 0.15
1.774LeuHis: 1.774 ± 0.07
8.672LeuIle: 8.672 ± 0.188
7.395LeuLys: 7.395 ± 0.145
8.945LeuLeu: 8.945 ± 0.188
2.437LeuMet: 2.437 ± 0.066
6.121LeuAsn: 6.121 ± 0.127
3.413LeuPro: 3.413 ± 0.102
3.021LeuGln: 3.021 ± 0.096
2.916LeuArg: 2.916 ± 0.104
6.595LeuSer: 6.595 ± 0.125
5.522LeuThr: 5.522 ± 0.114
5.5LeuVal: 5.5 ± 0.13
0.594LeuTrp: 0.594 ± 0.037
3.051LeuTyr: 3.051 ± 0.098
0.015LeuXaa: 0.015 ± 0.005
Met
1.637MetAla: 1.637 ± 0.067
0.169MetCys: 0.169 ± 0.021
1.205MetAsp: 1.205 ± 0.059
1.351MetGlu: 1.351 ± 0.057
1.138MetPhe: 1.138 ± 0.049
1.456MetGly: 1.456 ± 0.064
0.527MetHis: 0.527 ± 0.034
2.752MetIle: 2.752 ± 0.081
2.352MetLys: 2.352 ± 0.072
2.494MetLeu: 2.494 ± 0.085
0.941MetMet: 0.941 ± 0.046
1.96MetAsn: 1.96 ± 0.064
0.907MetPro: 0.907 ± 0.049
0.8MetGln: 0.8 ± 0.049
1.011MetArg: 1.011 ± 0.051
2.054MetSer: 2.054 ± 0.066
1.806MetThr: 1.806 ± 0.062
1.478MetVal: 1.478 ± 0.066
0.159MetTrp: 0.159 ± 0.02
0.812MetTyr: 0.812 ± 0.044
0.005MetXaa: 0.005 ± 0.004
Asn
2.931AsnAla: 2.931 ± 0.087
0.313AsnCys: 0.313 ± 0.029
3.619AsnAsp: 3.619 ± 0.103
4.462AsnGlu: 4.462 ± 0.112
2.159AsnPhe: 2.159 ± 0.075
3.239AsnGly: 3.239 ± 0.094
1.905AsnHis: 1.905 ± 0.067
4.963AsnIle: 4.963 ± 0.109
4.789AsnLys: 4.789 ± 0.138
4.394AsnLeu: 4.394 ± 0.115
1.413AsnMet: 1.413 ± 0.055
3.495AsnAsn: 3.495 ± 0.107
1.965AsnPro: 1.965 ± 0.076
3.304AsnGln: 3.304 ± 0.105
2.144AsnArg: 2.144 ± 0.065
2.797AsnSer: 2.797 ± 0.101
2.648AsnThr: 2.648 ± 0.092
3.597AsnVal: 3.597 ± 0.091
0.42AsnTrp: 0.42 ± 0.031
2.596AsnTyr: 2.596 ± 0.094
0.017AsnXaa: 0.017 ± 0.007
Pro
1.441ProAla: 1.441 ± 0.063
0.186ProCys: 0.186 ± 0.022
1.568ProAsp: 1.568 ± 0.063
2.29ProGlu: 2.29 ± 0.078
1.769ProPhe: 1.769 ± 0.059
1.868ProGly: 1.868 ± 0.076
0.922ProHis: 0.922 ± 0.055
2.785ProIle: 2.785 ± 0.082
2.266ProLys: 2.266 ± 0.068
3.07ProLeu: 3.07 ± 0.092
0.83ProMet: 0.83 ± 0.048
1.789ProAsn: 1.789 ± 0.083
0.676ProPro: 0.676 ± 0.046
1.312ProGln: 1.312 ± 0.059
0.899ProArg: 0.899 ± 0.047
1.987ProSer: 1.987 ± 0.065
1.905ProThr: 1.905 ± 0.075
2.186ProVal: 2.186 ± 0.073
0.224ProTrp: 0.224 ± 0.027
1.381ProTyr: 1.381 ± 0.064
0.005ProXaa: 0.005 ± 0.003
Gln
2.285GlnAla: 2.285 ± 0.079
0.224GlnCys: 0.224 ± 0.021
1.99GlnAsp: 1.99 ± 0.079
2.352GlnGlu: 2.352 ± 0.079
2.161GlnPhe: 2.161 ± 0.075
1.895GlnGly: 1.895 ± 0.078
1.185GlnHis: 1.185 ± 0.057
3.142GlnIle: 3.142 ± 0.099
2.79GlnLys: 2.79 ± 0.093
4.524GlnLeu: 4.524 ± 0.127
1.128GlnMet: 1.128 ± 0.048
2.407GlnAsn: 2.407 ± 0.094
1.381GlnPro: 1.381 ± 0.06
2.288GlnGln: 2.288 ± 0.083
1.831GlnArg: 1.831 ± 0.059
3.12GlnSer: 3.12 ± 0.1
2.42GlnThr: 2.42 ± 0.083
2.313GlnVal: 2.313 ± 0.082
0.373GlnTrp: 0.373 ± 0.033
1.826GlnTyr: 1.826 ± 0.068
0.01GlnXaa: 0.01 ± 0.005
Arg
2.057ArgAla: 2.057 ± 0.085
0.206ArgCys: 0.206 ± 0.023
1.938ArgAsp: 1.938 ± 0.071
2.499ArgGlu: 2.499 ± 0.093
1.632ArgPhe: 1.632 ± 0.057
1.98ArgGly: 1.98 ± 0.075
0.961ArgHis: 0.961 ± 0.054
2.901ArgIle: 2.901 ± 0.09
2.777ArgLys: 2.777 ± 0.091
3.674ArgLeu: 3.674 ± 0.106
1.093ArgMet: 1.093 ± 0.055
1.846ArgAsn: 1.846 ± 0.072
1.105ArgPro: 1.105 ± 0.055
1.712ArgGln: 1.712 ± 0.068
1.587ArgArg: 1.587 ± 0.084
1.91ArgSer: 1.91 ± 0.068
1.816ArgThr: 1.816 ± 0.072
2.273ArgVal: 2.273 ± 0.083
0.273ArgTrp: 0.273 ± 0.031
1.625ArgTyr: 1.625 ± 0.067
0.005ArgXaa: 0.005 ± 0.003
Ser
3.292SerAla: 3.292 ± 0.105
0.345SerCys: 0.345 ± 0.03
3.244SerAsp: 3.244 ± 0.114
3.913SerGlu: 3.913 ± 0.113
2.991SerPhe: 2.991 ± 0.091
3.97SerGly: 3.97 ± 0.111
1.612SerHis: 1.612 ± 0.072
5.691SerIle: 5.691 ± 0.139
4.75SerLys: 4.75 ± 0.123
5.776SerLeu: 5.776 ± 0.139
1.717SerMet: 1.717 ± 0.068
3.614SerAsn: 3.614 ± 0.118
1.794SerPro: 1.794 ± 0.069
2.675SerGln: 2.675 ± 0.08
2.211SerArg: 2.211 ± 0.069
3.838SerSer: 3.838 ± 0.124
3.577SerThr: 3.577 ± 0.11
3.726SerVal: 3.726 ± 0.108
0.509SerTrp: 0.509 ± 0.034
2.559SerTyr: 2.559 ± 0.081
0.01SerXaa: 0.01 ± 0.005
Thr
3.056ThrAla: 3.056 ± 0.084
0.368ThrCys: 0.368 ± 0.034
2.877ThrAsp: 2.877 ± 0.085
3.21ThrGlu: 3.21 ± 0.104
2.718ThrPhe: 2.718 ± 0.079
3.706ThrGly: 3.706 ± 0.099
1.538ThrHis: 1.538 ± 0.06
5.055ThrIle: 5.055 ± 0.113
3.659ThrLys: 3.659 ± 0.103
5.527ThrLeu: 5.527 ± 0.103
1.329ThrMet: 1.329 ± 0.05
2.869ThrAsn: 2.869 ± 0.089
2.161ThrPro: 2.161 ± 0.067
2.313ThrGln: 2.313 ± 0.082
1.808ThrArg: 1.808 ± 0.061
3.627ThrSer: 3.627 ± 0.103
3.423ThrThr: 3.423 ± 0.122
3.696ThrVal: 3.696 ± 0.103
0.452ThrTrp: 0.452 ± 0.03
2.266ThrTyr: 2.266 ± 0.086
0.015ThrXaa: 0.015 ± 0.007
Val
4.062ValAla: 4.062 ± 0.102
0.482ValCys: 0.482 ± 0.033
3.669ValAsp: 3.669 ± 0.093
4.312ValGlu: 4.312 ± 0.117
2.787ValPhe: 2.787 ± 0.095
4.208ValGly: 4.208 ± 0.114
1.24ValHis: 1.24 ± 0.067
5.875ValIle: 5.875 ± 0.119
4.707ValLys: 4.707 ± 0.133
5.93ValLeu: 5.93 ± 0.141
1.764ValMet: 1.764 ± 0.074
3.677ValAsn: 3.677 ± 0.09
2.146ValPro: 2.146 ± 0.075
2.151ValGln: 2.151 ± 0.074
2.124ValArg: 2.124 ± 0.079
4.178ValSer: 4.178 ± 0.113
4.007ValThr: 4.007 ± 0.094
4.658ValVal: 4.658 ± 0.135
0.47ValTrp: 0.47 ± 0.041
2.283ValTyr: 2.283 ± 0.08
0.025ValXaa: 0.025 ± 0.007
Trp
0.355TrpAla: 0.355 ± 0.027
0.062TrpCys: 0.062 ± 0.011
0.323TrpAsp: 0.323 ± 0.036
0.373TrpGlu: 0.373 ± 0.031
0.45TrpPhe: 0.45 ± 0.037
0.497TrpGly: 0.497 ± 0.041
0.174TrpHis: 0.174 ± 0.024
0.698TrpIle: 0.698 ± 0.04
0.422TrpLys: 0.422 ± 0.034
0.991TrpLeu: 0.991 ± 0.046
0.246TrpMet: 0.246 ± 0.023
0.45TrpAsn: 0.45 ± 0.035
0.206TrpPro: 0.206 ± 0.023
0.281TrpGln: 0.281 ± 0.027
0.288TrpArg: 0.288 ± 0.03
0.487TrpSer: 0.487 ± 0.034
0.37TrpThr: 0.37 ± 0.029
0.437TrpVal: 0.437 ± 0.031
0.067TrpTrp: 0.067 ± 0.013
0.293TrpTyr: 0.293 ± 0.03
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.102TyrAla: 2.102 ± 0.072
0.286TyrCys: 0.286 ± 0.028
2.601TyrAsp: 2.601 ± 0.09
2.586TyrGlu: 2.586 ± 0.078
1.962TyrPhe: 1.962 ± 0.08
2.415TyrGly: 2.415 ± 0.071
1.128TyrHis: 1.128 ± 0.058
3.279TyrIle: 3.279 ± 0.097
2.648TyrLys: 2.648 ± 0.091
3.89TyrLeu: 3.89 ± 0.11
0.912TyrMet: 0.912 ± 0.046
2.072TyrAsn: 2.072 ± 0.085
1.401TyrPro: 1.401 ± 0.067
1.98TyrGln: 1.98 ± 0.077
1.558TyrArg: 1.558 ± 0.07
2.246TyrSer: 2.246 ± 0.082
2.012TyrThr: 2.012 ± 0.076
2.387TyrVal: 2.387 ± 0.074
0.298TyrTrp: 0.298 ± 0.026
1.642TyrTyr: 1.642 ± 0.066
0.012TyrXaa: 0.012 ± 0.005
Xaa
0.02XaaAla: 0.02 ± 0.007
0.002XaaCys: 0.002 ± 0.002
0.015XaaAsp: 0.015 ± 0.006
0.005XaaGlu: 0.005 ± 0.003
0.01XaaPhe: 0.01 ± 0.005
0.007XaaGly: 0.007 ± 0.004
0.002XaaHis: 0.002 ± 0.002
0.005XaaIle: 0.005 ± 0.004
0.025XaaLys: 0.025 ± 0.008
0.017XaaLeu: 0.017 ± 0.007
0.005XaaMet: 0.005 ± 0.003
0.022XaaAsn: 0.022 ± 0.008
0.005XaaPro: 0.005 ± 0.003
0.007XaaGln: 0.007 ± 0.005
0.017XaaArg: 0.017 ± 0.007
0.007XaaSer: 0.007 ± 0.004
0.015XaaThr: 0.015 ± 0.007
0.01XaaVal: 0.01 ± 0.005
0.0XaaTrp: 0.0 ± 0.0
0.002XaaTyr: 0.002 ± 0.002
1.125XaaXaa: 1.125 ± 0.154
Statistics based on 1603 proteins (402552 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski