Thermovenabulum gondwanense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermosediminibacterales; Thermosediminibacteraceae; Thermovenabulum

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2237 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A161Q9M0|A0A161Q9M0_9FIRM Uncharacterized protein OS=Thermovenabulum gondwanense OX=520767 GN=ATZ99_21200 PE=4 SV=1
MM1 pKa = 7.39KK2 pKa = 10.74VFVDD6 pKa = 3.42QDD8 pKa = 3.79LCISCGLCIDD18 pKa = 4.45TCPEE22 pKa = 3.86VYY24 pKa = 9.92SWNDD28 pKa = 3.2DD29 pKa = 3.41GKK31 pKa = 10.86AQAIDD36 pKa = 3.82SEE38 pKa = 5.02VPADD42 pKa = 4.21LEE44 pKa = 4.5DD45 pKa = 3.71EE46 pKa = 4.15ARR48 pKa = 11.84EE49 pKa = 3.95ALEE52 pKa = 4.24NCPSEE57 pKa = 4.59AIKK60 pKa = 10.95EE61 pKa = 4.17EE62 pKa = 4.14

Molecular weight: 6.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A161PW99|A0A161PW99_9FIRM Uncharacterized protein OS=Thermovenabulum gondwanense OX=520767 GN=ATZ99_16300 PE=4 SV=1
MM1 pKa = 7.8KK2 pKa = 10.22LRR4 pKa = 11.84EE5 pKa = 4.53SILTALLMAIGYY17 pKa = 8.03VLHH20 pKa = 6.3QVTPPIVAGMRR31 pKa = 11.84PNFLLVMLFLSIFINPKK48 pKa = 8.46PANALLAGFLGGVFAALSTTFPGGQIANIVDD79 pKa = 3.89EE80 pKa = 5.75LITSQVIALLVRR92 pKa = 11.84VTPNLNRR99 pKa = 11.84QIAVPIFTLLGTMISGAIFLSVAMIVVGALPTAFSTLYY137 pKa = 9.71TVVVLPTAAINTVVGAILYY156 pKa = 9.39NLARR160 pKa = 11.84TALRR164 pKa = 11.84TVVKK168 pKa = 9.89FF169 pKa = 3.57

Molecular weight: 17.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2237

0

2237

679041

29

2326

303.5

34.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.72 ± 0.063

1.034 ± 0.021

4.823 ± 0.041

8.147 ± 0.064

4.601 ± 0.044

7.246 ± 0.051

1.312 ± 0.02

9.46 ± 0.058

8.883 ± 0.053

9.673 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.494 ± 0.025

4.687 ± 0.045

3.69 ± 0.033

2.212 ± 0.027

4.125 ± 0.038

5.26 ± 0.035

4.412 ± 0.039

7.019 ± 0.048

0.633 ± 0.016

3.572 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski