Thauera chlorobenzoica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Thauera

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3343 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L6FGW0|A0A1L6FGW0_9RHOO O-succinylhomoserine sulfhydrylase OS=Thauera chlorobenzoica OX=96773 GN=metZ PE=3 SV=1
MM1 pKa = 7.71LYY3 pKa = 10.66APDD6 pKa = 4.16HH7 pKa = 5.68YY8 pKa = 10.79RR9 pKa = 11.84GLDD12 pKa = 3.46LGEE15 pKa = 5.01LEE17 pKa = 5.59LDD19 pKa = 3.95NACVACALLADD30 pKa = 4.25YY31 pKa = 8.3LTGEE35 pKa = 4.73DD36 pKa = 4.22EE37 pKa = 4.73PPTGEE42 pKa = 4.6LDD44 pKa = 3.53SLSRR48 pKa = 11.84QVADD52 pKa = 4.19SMAALGWSIPPDD64 pKa = 3.66AAPAFALKK72 pKa = 10.7VCGDD76 pKa = 3.89SEE78 pKa = 4.39RR79 pKa = 11.84LNN81 pKa = 3.65

Molecular weight: 8.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L6FHD7|A0A1L6FHD7_9RHOO Putative pilus assembly protein OS=Thauera chlorobenzoica OX=96773 GN=Tchl_3360 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84THH16 pKa = 5.75GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVIRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.91GRR39 pKa = 11.84HH40 pKa = 4.92RR41 pKa = 11.84LAVV44 pKa = 3.37

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3343

0

3343

1097188

37

2131

328.2

35.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.471 ± 0.065

1.021 ± 0.015

5.382 ± 0.032

5.938 ± 0.04

3.535 ± 0.025

8.476 ± 0.04

2.402 ± 0.019

4.507 ± 0.029

2.845 ± 0.037

11.147 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.266 ± 0.022

2.291 ± 0.023

5.19 ± 0.029

3.316 ± 0.027

7.812 ± 0.042

4.762 ± 0.027

4.683 ± 0.027

7.423 ± 0.045

1.365 ± 0.018

2.169 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski