Conexibacter sp. Seoho-28

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter; unclassified Conexibacter

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4386 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T4UBY5|A0A2T4UBY5_9ACTN MlaD domain-containing protein OS=Conexibacter sp. Seoho-28 OX=2133960 GN=C7Y72_21930 PE=4 SV=1
MM1 pKa = 8.22PDD3 pKa = 3.25PTLADD8 pKa = 3.74DD9 pKa = 5.66DD10 pKa = 4.69FAASLTDD17 pKa = 3.24SSLYY21 pKa = 10.87SIGAYY26 pKa = 9.93FCDD29 pKa = 3.37RR30 pKa = 11.84HH31 pKa = 6.19PEE33 pKa = 3.91LVEE36 pKa = 4.6DD37 pKa = 4.19VLAQSVDD44 pKa = 3.1IEE46 pKa = 4.44QQGLRR51 pKa = 11.84AWATTEE57 pKa = 4.02GTSVEE62 pKa = 4.47TAFQTLVTGLAVRR75 pKa = 11.84YY76 pKa = 8.32FSAVAGGGG84 pKa = 3.35

Molecular weight: 8.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T4UI88|A0A2T4UI88_9ACTN HTH tetR-type domain-containing protein OS=Conexibacter sp. Seoho-28 OX=2133960 GN=C7Y72_04480 PE=4 SV=1
MM1 pKa = 7.19LRR3 pKa = 11.84SRR5 pKa = 11.84RR6 pKa = 11.84LRR8 pKa = 11.84SRR10 pKa = 11.84LRR12 pKa = 11.84PAPPRR17 pKa = 11.84PRR19 pKa = 11.84RR20 pKa = 11.84SPPRR24 pKa = 11.84ATAPRR29 pKa = 11.84PLRR32 pKa = 11.84PAPRR36 pKa = 11.84RR37 pKa = 11.84AARR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84GGRR45 pKa = 11.84GWRR48 pKa = 11.84RR49 pKa = 11.84SPAPSGCPGAWRR61 pKa = 11.84RR62 pKa = 11.84SARR65 pKa = 3.51

Molecular weight: 7.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4386

0

4386

1458732

29

2462

332.6

35.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.532 ± 0.066

0.8 ± 0.01

6.338 ± 0.032

5.455 ± 0.051

2.712 ± 0.022

9.569 ± 0.046

2.007 ± 0.021

3.319 ± 0.027

1.746 ± 0.029

10.397 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.517 ± 0.015

1.524 ± 0.02

6.132 ± 0.034

2.668 ± 0.02

8.98 ± 0.052

4.453 ± 0.025

6.067 ± 0.04

8.864 ± 0.032

1.23 ± 0.014

1.69 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski