Amino acid dipepetide frequency for Moniliophthora perniciosa (strain FA553 / isolate CP02) (Witches -broom disease fungus) (Marasmius perniciosus)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	7.534AlaAla: 7.534 ± 0.056	1.033AlaCys: 1.033 ± 0.022	3.945AlaAsp: 3.945 ± 0.046	4.811AlaGlu: 4.811 ± 0.05	3.345AlaPhe: 3.345 ± 0.037	5.298AlaGly: 5.298 ± 0.05	1.769AlaHis: 1.769 ± 0.029	4.325AlaIle: 4.325 ± 0.039	4.099AlaLys: 4.099 ± 0.047	7.836AlaLeu: 7.836 ± 0.065	1.849AlaMet: 1.849 ± 0.028	2.948AlaAsn: 2.948 ± 0.041	4.059AlaPro: 4.059 ± 0.043	3.114AlaGln: 3.114 ± 0.039	4.494AlaArg: 4.494 ± 0.048	6.555AlaSer: 6.555 ± 0.061	4.781AlaThr: 4.781 ± 0.047	5.112AlaVal: 5.112 ± 0.054	1.143AlaTrp: 1.143 ± 0.024	2.11AlaTyr: 2.11 ± 0.031	0.039AlaXaa: 0.039 ± 0.004
Cys	0.946CysAla: 0.946 ± 0.019	0.267CysCys: 0.267 ± 0.01	0.646CysAsp: 0.646 ± 0.014	0.595CysGlu: 0.595 ± 0.013	0.571CysPhe: 0.571 ± 0.017	0.913CysGly: 0.913 ± 0.022	0.321CysHis: 0.321 ± 0.011	0.739CysIle: 0.739 ± 0.017	0.574CysLys: 0.574 ± 0.015	1.176CysLeu: 1.176 ± 0.025	0.27CysMet: 0.27 ± 0.01	0.474CysAsn: 0.474 ± 0.014	0.727CysPro: 0.727 ± 0.02	0.456CysGln: 0.456 ± 0.013	0.687CysArg: 0.687 ± 0.017	0.961CysSer: 0.961 ± 0.022	0.731CysThr: 0.731 ± 0.017	0.775CysVal: 0.775 ± 0.017	0.217CysTrp: 0.217 ± 0.009	0.37CysTyr: 0.37 ± 0.011	0.008CysXaa: 0.008 ± 0.002
Asp	4.492AspAla: 4.492 ± 0.046	0.63AspCys: 0.63 ± 0.018	4.288AspAsp: 4.288 ± 0.058	4.59AspGlu: 4.59 ± 0.049	2.284AspPhe: 2.284 ± 0.029	4.111AspGly: 4.111 ± 0.043	1.248AspHis: 1.248 ± 0.024	3.383AspIle: 3.383 ± 0.042	2.535AspLys: 2.535 ± 0.035	5.012AspLeu: 5.012 ± 0.045	1.247AspMet: 1.247 ± 0.026	1.986AspAsn: 1.986 ± 0.032	3.419AspPro: 3.419 ± 0.038	1.728AspGln: 1.728 ± 0.032	2.805AspArg: 2.805 ± 0.038	4.161AspSer: 4.161 ± 0.042	3.161AspThr: 3.161 ± 0.042	3.914AspVal: 3.914 ± 0.038	0.977AspTrp: 0.977 ± 0.02	1.631AspTyr: 1.631 ± 0.024	0.02AspXaa: 0.02 ± 0.003
Glu	5.024GluAla: 5.024 ± 0.057	0.693GluCys: 0.693 ± 0.018	4.308GluAsp: 4.308 ± 0.048	5.779GluGlu: 5.779 ± 0.065	2.026GluPhe: 2.026 ± 0.026	3.879GluGly: 3.879 ± 0.042	1.447GluHis: 1.447 ± 0.024	3.226GluIle: 3.226 ± 0.036	3.915GluLys: 3.915 ± 0.047	5.46GluLeu: 5.46 ± 0.049	1.522GluMet: 1.522 ± 0.022	2.26GluAsn: 2.26 ± 0.037	2.563GluPro: 2.563 ± 0.033	2.368GluGln: 2.368 ± 0.032	3.939GluArg: 3.939 ± 0.051	4.168GluSer: 4.168 ± 0.047	3.216GluThr: 3.216 ± 0.043	3.838GluVal: 3.838 ± 0.041	1.031GluTrp: 1.031 ± 0.02	1.769GluTyr: 1.769 ± 0.026	0.016GluXaa: 0.016 ± 0.003
Phe	3.079PheAla: 3.079 ± 0.034	0.583PheCys: 0.583 ± 0.015	2.496PheAsp: 2.496 ± 0.027	2.258PheGlu: 2.258 ± 0.026	1.786PhePhe: 1.786 ± 0.028	2.943PheGly: 2.943 ± 0.039	0.941PheHis: 0.941 ± 0.019	2.249PheIle: 2.249 ± 0.036	1.755PheLys: 1.755 ± 0.028	3.735PheLeu: 3.735 ± 0.037	0.897PheMet: 0.897 ± 0.018	1.655PheAsn: 1.655 ± 0.027	2.0PhePro: 2.0 ± 0.031	1.337PheGln: 1.337 ± 0.022	2.034PheArg: 2.034 ± 0.03	3.156PheSer: 3.156 ± 0.036	2.469PheThr: 2.469 ± 0.034	2.672PheVal: 2.672 ± 0.036	0.668PheTrp: 0.668 ± 0.016	1.187PheTyr: 1.187 ± 0.021	0.015PheXaa: 0.015 ± 0.002
Gly	4.914GlyAla: 4.914 ± 0.052	0.87GlyCys: 0.87 ± 0.019	3.527GlyAsp: 3.527 ± 0.037	3.591GlyGlu: 3.591 ± 0.037	2.806GlyPhe: 2.806 ± 0.029	5.622GlyGly: 5.622 ± 0.07	1.613GlyHis: 1.613 ± 0.026	3.704GlyIle: 3.704 ± 0.038	3.817GlyLys: 3.817 ± 0.044	5.819GlyLeu: 5.819 ± 0.05	1.601GlyMet: 1.601 ± 0.03	2.663GlyAsn: 2.663 ± 0.038	3.135GlyPro: 3.135 ± 0.038	2.279GlyGln: 2.279 ± 0.033	3.741GlyArg: 3.741 ± 0.044	5.344GlySer: 5.344 ± 0.052	4.164GlyThr: 4.164 ± 0.042	4.544GlyVal: 4.544 ± 0.052	1.189GlyTrp: 1.189 ± 0.021	2.16GlyTyr: 2.16 ± 0.028	0.02GlyXaa: 0.02 ± 0.003
His	1.801HisAla: 1.801 ± 0.025	0.33HisCys: 0.33 ± 0.013	1.297HisAsp: 1.297 ± 0.024	1.259HisGlu: 1.259 ± 0.021	1.025HisPhe: 1.025 ± 0.024	1.581HisGly: 1.581 ± 0.028	0.733HisHis: 0.733 ± 0.016	1.413HisIle: 1.413 ± 0.027	0.996HisLys: 0.996 ± 0.02	2.349HisLeu: 2.349 ± 0.031	0.491HisMet: 0.491 ± 0.013	0.852HisAsn: 0.852 ± 0.019	1.681HisPro: 1.681 ± 0.024	0.863HisGln: 0.863 ± 0.018	1.467HisArg: 1.467 ± 0.024	1.788HisSer: 1.788 ± 0.031	1.31HisThr: 1.31 ± 0.019	1.521HisVal: 1.521 ± 0.024	0.383HisTrp: 0.383 ± 0.012	0.721HisTyr: 0.721 ± 0.017	0.009HisXaa: 0.009 ± 0.002
Ile	4.265IleAla: 4.265 ± 0.042	0.762IleCys: 0.762 ± 0.018	3.095IleAsp: 3.095 ± 0.035	3.077IleGlu: 3.077 ± 0.034	2.205IlePhe: 2.205 ± 0.035	3.432IleGly: 3.432 ± 0.041	1.439IleHis: 1.439 ± 0.024	2.986IleIle: 2.986 ± 0.041	2.456IleLys: 2.456 ± 0.035	5.077IleLeu: 5.077 ± 0.052	1.101IleMet: 1.101 ± 0.023	1.978IleAsn: 1.978 ± 0.029	3.381IlePro: 3.381 ± 0.034	2.04IleGln: 2.04 ± 0.028	3.136IleArg: 3.136 ± 0.038	4.144IleSer: 4.144 ± 0.046	3.172IleThr: 3.172 ± 0.041	3.541IleVal: 3.541 ± 0.037	0.82IleTrp: 0.82 ± 0.02	1.56IleTyr: 1.56 ± 0.024	0.022IleXaa: 0.022 ± 0.003
Lys	4.424LysAla: 4.424 ± 0.046	0.537LysCys: 0.537 ± 0.014	3.04LysAsp: 3.04 ± 0.033	3.894LysGlu: 3.894 ± 0.047	1.705LysPhe: 1.705 ± 0.031	3.349LysGly: 3.349 ± 0.045	1.19LysHis: 1.19 ± 0.022	2.392LysIle: 2.392 ± 0.034	3.611LysLys: 3.611 ± 0.053	4.547LysLeu: 4.547 ± 0.04	1.138LysMet: 1.138 ± 0.02	1.915LysAsn: 1.915 ± 0.028	2.696LysPro: 2.696 ± 0.038	1.916LysGln: 1.916 ± 0.03	3.561LysArg: 3.561 ± 0.037	3.491LysSer: 3.491 ± 0.04	2.847LysThr: 2.847 ± 0.038	3.12LysVal: 3.12 ± 0.039	0.814LysTrp: 0.814 ± 0.017	1.517LysTyr: 1.517 ± 0.024	0.014LysXaa: 0.014 ± 0.002
Leu	7.548LeuAla: 7.548 ± 0.06	1.184LeuCys: 1.184 ± 0.02	5.252LeuAsp: 5.252 ± 0.049	5.635LeuGlu: 5.635 ± 0.062	3.569LeuPhe: 3.569 ± 0.04	5.81LeuGly: 5.81 ± 0.052	2.316LeuHis: 2.316 ± 0.031	4.449LeuIle: 4.449 ± 0.041	4.719LeuLys: 4.719 ± 0.044	8.551LeuLeu: 8.551 ± 0.077	1.877LeuMet: 1.877 ± 0.027	3.491LeuAsn: 3.491 ± 0.039	5.587LeuPro: 5.587 ± 0.055	3.607LeuGln: 3.607 ± 0.046	5.637LeuArg: 5.637 ± 0.051	7.334LeuSer: 7.334 ± 0.053	5.095LeuThr: 5.095 ± 0.048	5.752LeuVal: 5.752 ± 0.052	1.318LeuTrp: 1.318 ± 0.024	2.606LeuTyr: 2.606 ± 0.031	0.042LeuXaa: 0.042 ± 0.005
Met	1.895MetAla: 1.895 ± 0.027	0.252MetCys: 0.252 ± 0.011	1.331MetAsp: 1.331 ± 0.025	1.345MetGlu: 1.345 ± 0.026	0.869MetPhe: 0.869 ± 0.016	1.444MetGly: 1.444 ± 0.025	0.484MetHis: 0.484 ± 0.012	1.095MetIle: 1.095 ± 0.02	1.247MetLys: 1.247 ± 0.021	1.934MetLeu: 1.934 ± 0.028	0.591MetMet: 0.591 ± 0.017	0.915MetAsn: 0.915 ± 0.02	1.177MetPro: 1.177 ± 0.021	0.846MetGln: 0.846 ± 0.018	1.245MetArg: 1.245 ± 0.022	1.884MetSer: 1.884 ± 0.027	1.352MetThr: 1.352 ± 0.024	1.37MetVal: 1.37 ± 0.025	0.283MetTrp: 0.283 ± 0.011	0.622MetTyr: 0.622 ± 0.015	0.013MetXaa: 0.013 ± 0.002
Asn	3.399AsnAla: 3.399 ± 0.038	0.429AsnCys: 0.429 ± 0.014	2.128AsnAsp: 2.128 ± 0.03	2.066AsnGlu: 2.066 ± 0.028	1.502AsnPhe: 1.502 ± 0.025	2.948AsnGly: 2.948 ± 0.04	0.87AsnHis: 0.87 ± 0.019	2.262AsnIle: 2.262 ± 0.032	1.665AsnLys: 1.665 ± 0.028	3.447AsnLeu: 3.447 ± 0.039	0.791AsnMet: 0.791 ± 0.018	1.594AsnAsn: 1.594 ± 0.028	2.482AsnPro: 2.482 ± 0.033	1.331AsnGln: 1.331 ± 0.023	1.915AsnArg: 1.915 ± 0.026	2.703AsnSer: 2.703 ± 0.036	2.343AsnThr: 2.343 ± 0.034	2.774AsnVal: 2.774 ± 0.035	0.596AsnTrp: 0.596 ± 0.015	1.076AsnTyr: 1.076 ± 0.021	0.01AsnXaa: 0.01 ± 0.002
Pro	4.255ProAla: 4.255 ± 0.047	0.539ProCys: 0.539 ± 0.016	3.187ProAsp: 3.187 ± 0.034	3.763ProGlu: 3.763 ± 0.036	2.202ProPhe: 2.202 ± 0.034	3.614ProGly: 3.614 ± 0.043	1.254ProHis: 1.254 ± 0.021	2.763ProIle: 2.763 ± 0.035	2.717ProLys: 2.717 ± 0.036	4.589ProLeu: 4.589 ± 0.039	1.075ProMet: 1.075 ± 0.021	2.308ProAsn: 2.308 ± 0.033	4.608ProPro: 4.608 ± 0.07	2.07ProGln: 2.07 ± 0.031	2.817ProArg: 2.817 ± 0.037	5.389ProSer: 5.389 ± 0.056	3.76ProThr: 3.76 ± 0.037	3.494ProVal: 3.494 ± 0.044	0.713ProTrp: 0.713 ± 0.017	1.486ProTyr: 1.486 ± 0.026	0.028ProXaa: 0.028 ± 0.003
Gln	3.126GlnAla: 3.126 ± 0.04	0.478GlnCys: 0.478 ± 0.014	1.981GlnAsp: 1.981 ± 0.03	2.27GlnGlu: 2.27 ± 0.033	1.372GlnPhe: 1.372 ± 0.023	2.199GlnGly: 2.199 ± 0.033	0.904GlnHis: 0.904 ± 0.02	1.916GlnIle: 1.916 ± 0.028	1.932GlnLys: 1.932 ± 0.028	3.353GlnLeu: 3.353 ± 0.038	0.867GlnMet: 0.867 ± 0.019	1.505GlnAsn: 1.505 ± 0.026	1.918GlnPro: 1.918 ± 0.032	1.775GlnGln: 1.775 ± 0.042	2.362GlnArg: 2.362 ± 0.028	2.696GlnSer: 2.696 ± 0.036	2.221GlnThr: 2.221 ± 0.031	2.334GlnVal: 2.334 ± 0.031	0.601GlnTrp: 0.601 ± 0.015	1.125GlnTyr: 1.125 ± 0.018	0.011GlnXaa: 0.011 ± 0.002
Arg	4.375ArgAla: 4.375 ± 0.042	0.739ArgCys: 0.739 ± 0.017	3.239ArgAsp: 3.239 ± 0.042	3.647ArgGlu: 3.647 ± 0.047	2.28ArgPhe: 2.28 ± 0.033	3.341ArgGly: 3.341 ± 0.043	1.452ArgHis: 1.452 ± 0.023	3.184ArgIle: 3.184 ± 0.04	3.581ArgLys: 3.581 ± 0.045	5.279ArgLeu: 5.279 ± 0.048	1.442ArgMet: 1.442 ± 0.024	2.198ArgAsn: 2.198 ± 0.028	2.834ArgPro: 2.834 ± 0.033	2.258ArgGln: 2.258 ± 0.031	4.263ArgArg: 4.263 ± 0.052	4.163ArgSer: 4.163 ± 0.044	3.172ArgThr: 3.172 ± 0.038	3.551ArgVal: 3.551 ± 0.039	0.991ArgTrp: 0.991 ± 0.021	1.74ArgTyr: 1.74 ± 0.027	0.02ArgXaa: 0.02 ± 0.003
Ser	5.988SerAla: 5.988 ± 0.051	0.907SerCys: 0.907 ± 0.018	4.3SerAsp: 4.3 ± 0.041	4.207SerGlu: 4.207 ± 0.05	3.193SerPhe: 3.193 ± 0.034	5.416SerGly: 5.416 ± 0.052	1.815SerHis: 1.815 ± 0.028	4.091SerIle: 4.091 ± 0.042	3.734SerLys: 3.734 ± 0.042	7.173SerLeu: 7.173 ± 0.057	1.637SerMet: 1.637 ± 0.024	3.01SerAsn: 3.01 ± 0.034	4.573SerPro: 4.573 ± 0.05	2.904SerGln: 2.904 ± 0.037	4.449SerArg: 4.449 ± 0.043	8.026SerSer: 8.026 ± 0.074	5.366SerThr: 5.366 ± 0.054	4.718SerVal: 4.718 ± 0.041	1.191SerTrp: 1.191 ± 0.022	2.09SerTyr: 2.09 ± 0.031	0.03SerXaa: 0.03 ± 0.003
Thr	4.694ThrAla: 4.694 ± 0.043	0.761ThrCys: 0.761 ± 0.017	2.816ThrAsp: 2.816 ± 0.035	3.082ThrGlu: 3.082 ± 0.035	2.613ThrPhe: 2.613 ± 0.032	4.069ThrGly: 4.069 ± 0.053	1.343ThrHis: 1.343 ± 0.024	3.505ThrIle: 3.505 ± 0.036	2.732ThrLys: 2.732 ± 0.034	5.755ThrLeu: 5.755 ± 0.05	1.289ThrMet: 1.289 ± 0.022	2.171ThrAsn: 2.171 ± 0.029	3.932ThrPro: 3.932 ± 0.046	2.007ThrGln: 2.007 ± 0.028	3.21ThrArg: 3.21 ± 0.036	5.177ThrSer: 5.177 ± 0.048	4.071ThrThr: 4.071 ± 0.043	3.976ThrVal: 3.976 ± 0.041	0.891ThrTrp: 0.891 ± 0.017	1.694ThrTyr: 1.694 ± 0.026	0.026ThrXaa: 0.026 ± 0.003
Val	5.118ValAla: 5.118 ± 0.043	0.787ValCys: 0.787 ± 0.019	3.903ValAsp: 3.903 ± 0.042	4.047ValGlu: 4.047 ± 0.049	2.682ValPhe: 2.682 ± 0.031	4.049ValGly: 4.049 ± 0.043	1.539ValHis: 1.539 ± 0.021	3.535ValIle: 3.535 ± 0.044	3.344ValLys: 3.344 ± 0.04	6.011ValLeu: 6.011 ± 0.054	1.43ValMet: 1.43 ± 0.021	2.478ValAsn: 2.478 ± 0.032	3.703ValPro: 3.703 ± 0.038	2.443ValGln: 2.443 ± 0.031	3.287ValArg: 3.287 ± 0.034	4.533ValSer: 4.533 ± 0.048	3.809ValThr: 3.809 ± 0.041	4.625ValVal: 4.625 ± 0.051	0.963ValTrp: 0.963 ± 0.022	1.969ValTyr: 1.969 ± 0.03	0.02ValXaa: 0.02 ± 0.003
Trp	1.085TrpAla: 1.085 ± 0.02	0.198TrpCys: 0.198 ± 0.009	0.965TrpAsp: 0.965 ± 0.019	0.925TrpGlu: 0.925 ± 0.02	0.639TrpPhe: 0.639 ± 0.017	1.004TrpGly: 1.004 ± 0.022	0.36TrpHis: 0.36 ± 0.011	0.865TrpIle: 0.865 ± 0.018	1.031TrpLys: 1.031 ± 0.021	1.407TrpLeu: 1.407 ± 0.023	0.414TrpMet: 0.414 ± 0.013	0.717TrpAsn: 0.717 ± 0.018	0.606TrpPro: 0.606 ± 0.017	0.522TrpGln: 0.522 ± 0.014	1.006TrpArg: 1.006 ± 0.02	1.151TrpSer: 1.151 ± 0.019	0.991TrpThr: 0.991 ± 0.019	0.903TrpVal: 0.903 ± 0.019	0.306TrpTrp: 0.306 ± 0.012	0.472TrpTyr: 0.472 ± 0.013	0.007TrpXaa: 0.007 ± 0.002
Tyr	2.207TyrAla: 2.207 ± 0.028	0.44TyrCys: 0.44 ± 0.014	1.859TyrAsp: 1.859 ± 0.026	1.581TyrGlu: 1.581 ± 0.028	1.227TyrPhe: 1.227 ± 0.023	2.071TyrGly: 2.071 ± 0.029	0.821TyrHis: 0.821 ± 0.02	1.588TyrIle: 1.588 ± 0.026	1.237TyrLys: 1.237 ± 0.024	2.85TyrLeu: 2.85 ± 0.036	0.65TyrMet: 0.65 ± 0.015	1.199TyrAsn: 1.199 ± 0.022	1.533TyrPro: 1.533 ± 0.025	1.065TyrGln: 1.065 ± 0.019	1.662TyrArg: 1.662 ± 0.026	1.968TyrSer: 1.968 ± 0.026	1.757TyrThr: 1.757 ± 0.026	1.717TyrVal: 1.717 ± 0.029	0.476TyrTrp: 0.476 ± 0.015	0.977TyrTyr: 0.977 ± 0.019	0.01TyrXaa: 0.01 ± 0.002
Xaa	0.028XaaAla: 0.028 ± 0.004	0.005XaaCys: 0.005 ± 0.001	0.019XaaAsp: 0.019 ± 0.003	0.023XaaGlu: 0.023 ± 0.003	0.012XaaPhe: 0.012 ± 0.002	0.031XaaGly: 0.031 ± 0.004	0.01XaaHis: 0.01 ± 0.002	0.021XaaIle: 0.021 ± 0.003	0.02XaaLys: 0.02 ± 0.003	0.021XaaLeu: 0.021 ± 0.003	0.017XaaMet: 0.017 ± 0.003	0.014XaaAsn: 0.014 ± 0.002	0.016XaaPro: 0.016 ± 0.002	0.014XaaGln: 0.014 ± 0.003	0.034XaaArg: 0.034 ± 0.003	0.027XaaSer: 0.027 ± 0.003	0.024XaaThr: 0.024 ± 0.003	0.025XaaVal: 0.025 ± 0.003	0.006XaaTrp: 0.006 ± 0.001	0.011XaaTyr: 0.011 ± 0.002	0.012XaaXaa: 0.012 ± 0.003

Statistics based on 13649 proteins (2499614 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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