Sediminibacterium goheungense

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3224 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R6ITU4|A0A4R6ITU4_9BACT Sortilin (Neurotensin receptor 3) OS=Sediminibacterium goheungense OX=1086393 GN=BC659_2650 PE=4 SV=1
MM1 pKa = 7.6NKK3 pKa = 8.21FTRR6 pKa = 11.84LWVSLVSLTLFTVFSAFRR24 pKa = 11.84FTGLPEE30 pKa = 4.3LGGAEE35 pKa = 4.08KK36 pKa = 10.03MYY38 pKa = 10.72NNPGKK43 pKa = 9.94VVKK46 pKa = 10.43DD47 pKa = 3.25ATVVRR52 pKa = 11.84NFTTRR57 pKa = 11.84VLKK60 pKa = 10.9NITRR64 pKa = 11.84AAGFTGRR71 pKa = 11.84TFNGNSNISLTVPGNMSFSNTPGTCGRR98 pKa = 11.84VVTYY102 pKa = 9.74AAPTAQANAVSVEE115 pKa = 3.63FDD117 pKa = 3.31YY118 pKa = 11.3TGNIQTFTVPAGVTSITIKK137 pKa = 11.03GIGADD142 pKa = 3.79GGNSLSSGVNGGRR155 pKa = 11.84GASLTGTFAVTPGQTIYY172 pKa = 10.46MVVGQRR178 pKa = 11.84GSDD181 pKa = 3.5DD182 pKa = 3.65FADD185 pKa = 4.71FGLGAAGGGGGTYY198 pKa = 10.06ISATPFGTPSAVPLMVAGAGGGAAAIVDD226 pKa = 4.07NNIHH230 pKa = 6.57ANANSVDD237 pKa = 3.5GNYY240 pKa = 10.73GVTGDD245 pKa = 4.55GGDD248 pKa = 3.66GALGTGGSGGEE259 pKa = 3.93AGTNSGAGAGWLADD273 pKa = 3.64GLSDD277 pKa = 4.92INSGDD282 pKa = 3.45LTGGLSQFGTNPFAGGSLFGVLYY305 pKa = 10.53GGYY308 pKa = 10.23GGGGSAGFVGGGGGGGYY325 pKa = 9.95SGGGGGGDD333 pKa = 3.14NGGGGGGGSFNGGTNPVNVPGVDD356 pKa = 3.59GDD358 pKa = 4.63DD359 pKa = 3.71GAGGNGKK366 pKa = 9.04VVITYY371 pKa = 7.42GTSVTVTQIAGLPSGATFPVGVTTNTFQATDD402 pKa = 3.74GVNTTTASFTVTVNDD417 pKa = 3.52TEE419 pKa = 5.0APVLTAPSNITYY431 pKa = 7.79TIPAGSSNCNAAAVNLGTPTVSDD454 pKa = 3.27NCGANTPTNNAPSLFPLGTTTVTWSVTDD482 pKa = 2.82IHH484 pKa = 6.99GNPATATQQVTVVAPEE500 pKa = 3.64IRR502 pKa = 11.84IASASFVFSILNGSTSIDD520 pKa = 3.73LATGTDD526 pKa = 3.98FGTTNINNQVTRR538 pKa = 11.84TYY540 pKa = 10.46IIDD543 pKa = 3.81NAGGTADD550 pKa = 4.83LSVNSINIAGANPSFFTVGGITLPATIPAGQTTTFTVTYY589 pKa = 8.94SASAGGTHH597 pKa = 6.44NAIVQLNNNDD607 pKa = 3.93CDD609 pKa = 3.39EE610 pKa = 4.39SAYY613 pKa = 11.1SFAIQGVTNQATTPITGNTSVCVSGTTQLANVTAGGTWSSANAAVATVDD662 pKa = 3.68ANGLVTAVSAGTANISYY679 pKa = 8.18TMPGGTVQVTVTVNAAPTAAISANGPTTFCAGGSVTLTATGGASYY724 pKa = 10.35LWSNGSTTSSITVSAAGTYY743 pKa = 10.41SVVATSAEE751 pKa = 4.4GCSSASVSSSVTVNPVPTAAISADD775 pKa = 3.52GPTTFCAGGSVTLTATGGASYY796 pKa = 10.28LWSNGATTSSITVSSGGVYY815 pKa = 10.34SVVATSAEE823 pKa = 4.4GCSSASVSSSVTVNPVPTAAISAA846 pKa = 4.02

Molecular weight: 81.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6IWM2|A0A4R6IWM2_9BACT NIPSNAP protein OS=Sediminibacterium goheungense OX=1086393 GN=BC659_2423 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.59RR3 pKa = 11.84TFQPHH8 pKa = 4.67KK9 pKa = 9.7RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.4SVHH16 pKa = 5.0GFRR19 pKa = 11.84KK20 pKa = 10.11RR21 pKa = 11.84MQTANGRR28 pKa = 11.84KK29 pKa = 8.71VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.04GRR39 pKa = 11.84KK40 pKa = 8.7KK41 pKa = 10.08LTVSSEE47 pKa = 4.1KK48 pKa = 10.7GLKK51 pKa = 9.34

Molecular weight: 6.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3224

0

3224

1116394

29

4357

346.3

38.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.563 ± 0.044

0.878 ± 0.014

5.046 ± 0.037

5.617 ± 0.062

4.881 ± 0.033

6.877 ± 0.042

1.94 ± 0.025

7.288 ± 0.04

6.85 ± 0.052

9.342 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.503 ± 0.026

5.312 ± 0.054

3.85 ± 0.025

4.034 ± 0.029

4.112 ± 0.03

6.261 ± 0.05

6.024 ± 0.081

6.36 ± 0.032

1.272 ± 0.017

3.992 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski