Marinobacter sp. AC-23

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter; unclassified Marinobacter

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3073 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S2CDY8|A0A1S2CDY8_9ALTE Uncharacterized protein OS=Marinobacter sp. AC-23 OX=1879031 GN=BCA33_02885 PE=4 SV=1
MM1 pKa = 7.3KK2 pKa = 10.08LKK4 pKa = 10.45YY5 pKa = 9.73SAAIICLALSPALVSAEE22 pKa = 4.05PEE24 pKa = 4.05AGDD27 pKa = 4.41GLFALTGTGSSDD39 pKa = 3.52NEE41 pKa = 3.78FDD43 pKa = 3.85NNVAAVSFDD52 pKa = 3.28VGKK55 pKa = 10.54FFSDD59 pKa = 2.99NLAAGLRR66 pKa = 11.84QSFGFADD73 pKa = 3.88SEE75 pKa = 4.72NNSSWSGASRR85 pKa = 11.84GFVDD89 pKa = 3.01YY90 pKa = 11.12HH91 pKa = 7.2FDD93 pKa = 3.65GGSWQPFVGANLGGIYY109 pKa = 10.38GDD111 pKa = 4.96DD112 pKa = 3.41VDD114 pKa = 4.06EE115 pKa = 4.62TFFAGPEE122 pKa = 4.04AGVKK126 pKa = 10.15YY127 pKa = 8.99YY128 pKa = 10.75VRR130 pKa = 11.84EE131 pKa = 3.8KK132 pKa = 10.52TYY134 pKa = 9.25ITVQMEE140 pKa = 4.12YY141 pKa = 10.58QVFFDD146 pKa = 4.23SASDD150 pKa = 3.69ADD152 pKa = 4.99DD153 pKa = 4.61NFDD156 pKa = 4.77DD157 pKa = 5.12GAFAYY162 pKa = 10.43SAGIGYY168 pKa = 9.17NFF170 pKa = 4.18

Molecular weight: 18.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S2CE99|A0A1S2CE99_9ALTE 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase OS=Marinobacter sp. AC-23 OX=1879031 GN=BCA33_02805 PE=4 SV=1
MM1 pKa = 7.35NVTTIGIDD9 pKa = 3.26LAKK12 pKa = 9.84TVFSIHH18 pKa = 6.11GTNQHH23 pKa = 5.19GKK25 pKa = 8.42VVVRR29 pKa = 11.84KK30 pKa = 9.72RR31 pKa = 11.84LNRR34 pKa = 11.84PKK36 pKa = 10.58LLAFFAQLPPCLIGMEE52 pKa = 4.34ACSGAHH58 pKa = 4.01YY59 pKa = 8.21WARR62 pKa = 11.84EE63 pKa = 4.0LTKK66 pKa = 10.39LGHH69 pKa = 6.81DD70 pKa = 3.89ARR72 pKa = 11.84IIAPRR77 pKa = 11.84FVAPYY82 pKa = 9.82RR83 pKa = 11.84KK84 pKa = 9.62SSKK87 pKa = 10.76NDD89 pKa = 3.34DD90 pKa = 3.64NDD92 pKa = 3.81AEE94 pKa = 4.76AICEE98 pKa = 4.09AVSRR102 pKa = 11.84PNMRR106 pKa = 11.84FVPIKK111 pKa = 9.78TQDD114 pKa = 3.32QQAALCLHH122 pKa = 7.63RR123 pKa = 11.84IRR125 pKa = 11.84RR126 pKa = 11.84GLIKK130 pKa = 10.46EE131 pKa = 3.74RR132 pKa = 11.84TAQINQIRR140 pKa = 11.84GLLAEE145 pKa = 5.25FGLIIPQGRR154 pKa = 11.84YY155 pKa = 7.89HH156 pKa = 6.58ARR158 pKa = 11.84HH159 pKa = 6.91RR160 pKa = 11.84IPEE163 pKa = 4.03ILEE166 pKa = 4.14DD167 pKa = 4.23AEE169 pKa = 4.71NGLPMLARR177 pKa = 11.84RR178 pKa = 11.84LLNNINQRR186 pKa = 11.84ILQLDD191 pKa = 4.24EE192 pKa = 5.66EE193 pKa = 4.57ILTYY197 pKa = 10.67DD198 pKa = 4.33RR199 pKa = 11.84EE200 pKa = 4.37IEE202 pKa = 4.17SMARR206 pKa = 11.84RR207 pKa = 11.84DD208 pKa = 3.54EE209 pKa = 4.08RR210 pKa = 11.84AKK212 pKa = 10.82RR213 pKa = 11.84LMAIPGIGPQTATAILASAPDD234 pKa = 3.56PRR236 pKa = 11.84QFKK239 pKa = 10.21SGRR242 pKa = 11.84HH243 pKa = 3.6FAAWLGLVPRR253 pKa = 11.84QYY255 pKa = 10.49STGGKK260 pKa = 8.48PRR262 pKa = 11.84LGRR265 pKa = 11.84ITKK268 pKa = 10.47RR269 pKa = 11.84GDD271 pKa = 2.81KK272 pKa = 10.35YY273 pKa = 11.32LRR275 pKa = 11.84TLLIHH280 pKa = 5.89GTRR283 pKa = 11.84AVIAKK288 pKa = 9.85LADD291 pKa = 3.48KK292 pKa = 10.75NDD294 pKa = 4.06RR295 pKa = 11.84LSGWARR301 pKa = 11.84EE302 pKa = 4.02LVEE305 pKa = 3.64RR306 pKa = 11.84RR307 pKa = 11.84GYY309 pKa = 10.24KK310 pKa = 9.6RR311 pKa = 11.84AAVALAAKK319 pKa = 9.37NARR322 pKa = 11.84IIWRR326 pKa = 11.84YY327 pKa = 8.61

Molecular weight: 37.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3073

0

3073

917237

51

1623

298.5

32.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.817 ± 0.05

0.945 ± 0.013

5.521 ± 0.039

6.432 ± 0.047

3.859 ± 0.028

7.844 ± 0.039

2.18 ± 0.021

5.42 ± 0.037

4.023 ± 0.037

10.609 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.663 ± 0.023

3.42 ± 0.028

4.58 ± 0.032

3.999 ± 0.033

6.109 ± 0.033

6.167 ± 0.037

5.192 ± 0.027

7.262 ± 0.04

1.373 ± 0.022

2.585 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski