Amino acid dipepetide frequency for Pasivirus A1 isolate (isolate Swine/France/ Pasivirus 1/2010)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.505AlaAla: 7.505 ± 0.0
1.876AlaCys: 1.876 ± 0.0
1.407AlaAsp: 1.407 ± 0.0
3.283AlaGlu: 3.283 ± 0.0
2.814AlaPhe: 2.814 ± 0.0
3.283AlaGly: 3.283 ± 0.0
1.876AlaHis: 1.876 ± 0.0
1.407AlaIle: 1.407 ± 0.0
2.345AlaLys: 2.345 ± 0.0
6.567AlaLeu: 6.567 ± 0.0
1.876AlaMet: 1.876 ± 0.0
3.752AlaAsn: 3.752 ± 0.0
5.629AlaPro: 5.629 ± 0.0
0.938AlaGln: 0.938 ± 0.0
1.876AlaArg: 1.876 ± 0.0
7.974AlaSer: 7.974 ± 0.0
2.345AlaThr: 2.345 ± 0.0
6.098AlaVal: 6.098 ± 0.0
0.938AlaTrp: 0.938 ± 0.0
2.345AlaTyr: 2.345 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
3.752CysAla: 3.752 ± 0.0
0.469CysCys: 0.469 ± 0.0
1.876CysAsp: 1.876 ± 0.0
0.469CysGlu: 0.469 ± 0.0
0.938CysPhe: 0.938 ± 0.0
1.876CysGly: 1.876 ± 0.0
0.469CysHis: 0.469 ± 0.0
1.407CysIle: 1.407 ± 0.0
1.407CysLys: 1.407 ± 0.0
1.407CysLeu: 1.407 ± 0.0
0.938CysMet: 0.938 ± 0.0
1.876CysAsn: 1.876 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.469CysGln: 0.469 ± 0.0
1.407CysArg: 1.407 ± 0.0
0.469CysSer: 0.469 ± 0.0
0.938CysThr: 0.938 ± 0.0
1.876CysVal: 1.876 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.469CysTyr: 0.469 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.345AspAla: 2.345 ± 0.0
1.407AspCys: 1.407 ± 0.0
3.283AspAsp: 3.283 ± 0.0
2.814AspGlu: 2.814 ± 0.0
3.283AspPhe: 3.283 ± 0.0
4.69AspGly: 4.69 ± 0.0
0.938AspHis: 0.938 ± 0.0
4.69AspIle: 4.69 ± 0.0
1.407AspLys: 1.407 ± 0.0
7.505AspLeu: 7.505 ± 0.0
2.814AspMet: 2.814 ± 0.0
2.345AspAsn: 2.345 ± 0.0
3.283AspPro: 3.283 ± 0.0
0.469AspGln: 0.469 ± 0.0
0.0AspArg: 0.0 ± 0.0
5.159AspSer: 5.159 ± 0.0
2.814AspThr: 2.814 ± 0.0
3.283AspVal: 3.283 ± 0.0
1.876AspTrp: 1.876 ± 0.0
3.752AspTyr: 3.752 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.69GluAla: 4.69 ± 0.0
0.469GluCys: 0.469 ± 0.0
0.938GluAsp: 0.938 ± 0.0
5.159GluGlu: 5.159 ± 0.0
2.345GluPhe: 2.345 ± 0.0
2.814GluGly: 2.814 ± 0.0
0.469GluHis: 0.469 ± 0.0
0.469GluIle: 0.469 ± 0.0
0.938GluLys: 0.938 ± 0.0
5.629GluLeu: 5.629 ± 0.0
1.407GluMet: 1.407 ± 0.0
0.469GluAsn: 0.469 ± 0.0
2.345GluPro: 2.345 ± 0.0
3.752GluGln: 3.752 ± 0.0
1.407GluArg: 1.407 ± 0.0
5.159GluSer: 5.159 ± 0.0
3.752GluThr: 3.752 ± 0.0
3.752GluVal: 3.752 ± 0.0
0.938GluTrp: 0.938 ± 0.0
2.345GluTyr: 2.345 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.752PheAla: 3.752 ± 0.0
0.938PheCys: 0.938 ± 0.0
5.159PheAsp: 5.159 ± 0.0
1.407PheGlu: 1.407 ± 0.0
3.283PhePhe: 3.283 ± 0.0
5.159PheGly: 5.159 ± 0.0
2.814PheHis: 2.814 ± 0.0
2.345PheIle: 2.345 ± 0.0
0.469PheLys: 0.469 ± 0.0
3.752PheLeu: 3.752 ± 0.0
0.938PheMet: 0.938 ± 0.0
2.814PheAsn: 2.814 ± 0.0
1.876PhePro: 1.876 ± 0.0
3.752PheGln: 3.752 ± 0.0
2.345PheArg: 2.345 ± 0.0
3.283PheSer: 3.283 ± 0.0
4.221PheThr: 4.221 ± 0.0
3.283PheVal: 3.283 ± 0.0
1.407PheTrp: 1.407 ± 0.0
1.876PheTyr: 1.876 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.345GlyAla: 2.345 ± 0.0
0.0GlyCys: 0.0 ± 0.0
5.159GlyAsp: 5.159 ± 0.0
3.283GlyGlu: 3.283 ± 0.0
2.814GlyPhe: 2.814 ± 0.0
4.69GlyGly: 4.69 ± 0.0
0.938GlyHis: 0.938 ± 0.0
2.345GlyIle: 2.345 ± 0.0
1.876GlyLys: 1.876 ± 0.0
7.505GlyLeu: 7.505 ± 0.0
1.876GlyMet: 1.876 ± 0.0
3.752GlyAsn: 3.752 ± 0.0
5.159GlyPro: 5.159 ± 0.0
2.814GlyGln: 2.814 ± 0.0
3.283GlyArg: 3.283 ± 0.0
8.443GlySer: 8.443 ± 0.0
4.69GlyThr: 4.69 ± 0.0
5.159GlyVal: 5.159 ± 0.0
1.876GlyTrp: 1.876 ± 0.0
2.814GlyTyr: 2.814 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.469HisAla: 0.469 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.407HisGlu: 1.407 ± 0.0
0.469HisPhe: 0.469 ± 0.0
2.345HisGly: 2.345 ± 0.0
0.469HisHis: 0.469 ± 0.0
0.938HisIle: 0.938 ± 0.0
1.876HisLys: 1.876 ± 0.0
3.752HisLeu: 3.752 ± 0.0
0.938HisMet: 0.938 ± 0.0
1.407HisAsn: 1.407 ± 0.0
1.407HisPro: 1.407 ± 0.0
0.938HisGln: 0.938 ± 0.0
0.469HisArg: 0.469 ± 0.0
2.345HisSer: 2.345 ± 0.0
0.938HisThr: 0.938 ± 0.0
1.876HisVal: 1.876 ± 0.0
0.0HisTrp: 0.0 ± 0.0
2.345HisTyr: 2.345 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.752IleAla: 3.752 ± 0.0
0.0IleCys: 0.0 ± 0.0
2.814IleAsp: 2.814 ± 0.0
3.752IleGlu: 3.752 ± 0.0
3.752IlePhe: 3.752 ± 0.0
1.407IleGly: 1.407 ± 0.0
0.938IleHis: 0.938 ± 0.0
1.876IleIle: 1.876 ± 0.0
2.345IleLys: 2.345 ± 0.0
3.283IleLeu: 3.283 ± 0.0
0.0IleMet: 0.0 ± 0.0
2.814IleAsn: 2.814 ± 0.0
2.814IlePro: 2.814 ± 0.0
0.938IleGln: 0.938 ± 0.0
1.407IleArg: 1.407 ± 0.0
2.814IleSer: 2.814 ± 0.0
1.876IleThr: 1.876 ± 0.0
3.752IleVal: 3.752 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.407IleTyr: 1.407 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.407LysAla: 1.407 ± 0.0
1.407LysCys: 1.407 ± 0.0
2.345LysAsp: 2.345 ± 0.0
2.814LysGlu: 2.814 ± 0.0
2.814LysPhe: 2.814 ± 0.0
2.814LysGly: 2.814 ± 0.0
0.938LysHis: 0.938 ± 0.0
2.814LysIle: 2.814 ± 0.0
1.407LysLys: 1.407 ± 0.0
5.629LysLeu: 5.629 ± 0.0
2.345LysMet: 2.345 ± 0.0
2.345LysAsn: 2.345 ± 0.0
2.345LysPro: 2.345 ± 0.0
1.876LysGln: 1.876 ± 0.0
3.752LysArg: 3.752 ± 0.0
2.814LysSer: 2.814 ± 0.0
1.407LysThr: 1.407 ± 0.0
1.407LysVal: 1.407 ± 0.0
1.407LysTrp: 1.407 ± 0.0
2.345LysTyr: 2.345 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.036LeuAla: 7.036 ± 0.0
1.876LeuCys: 1.876 ± 0.0
5.629LeuAsp: 5.629 ± 0.0
3.752LeuGlu: 3.752 ± 0.0
2.814LeuPhe: 2.814 ± 0.0
6.098LeuGly: 6.098 ± 0.0
4.221LeuHis: 4.221 ± 0.0
4.221LeuIle: 4.221 ± 0.0
7.036LeuLys: 7.036 ± 0.0
9.85LeuLeu: 9.85 ± 0.0
1.876LeuMet: 1.876 ± 0.0
3.283LeuAsn: 3.283 ± 0.0
4.221LeuPro: 4.221 ± 0.0
1.876LeuGln: 1.876 ± 0.0
4.221LeuArg: 4.221 ± 0.0
8.443LeuSer: 8.443 ± 0.0
7.036LeuThr: 7.036 ± 0.0
9.381LeuVal: 9.381 ± 0.0
0.938LeuTrp: 0.938 ± 0.0
2.345LeuTyr: 2.345 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.814MetAla: 2.814 ± 0.0
0.469MetCys: 0.469 ± 0.0
1.876MetAsp: 1.876 ± 0.0
1.407MetGlu: 1.407 ± 0.0
1.407MetPhe: 1.407 ± 0.0
0.938MetGly: 0.938 ± 0.0
0.469MetHis: 0.469 ± 0.0
1.407MetIle: 1.407 ± 0.0
0.938MetLys: 0.938 ± 0.0
3.283MetLeu: 3.283 ± 0.0
1.407MetMet: 1.407 ± 0.0
2.345MetAsn: 2.345 ± 0.0
1.407MetPro: 1.407 ± 0.0
0.0MetGln: 0.0 ± 0.0
0.469MetArg: 0.469 ± 0.0
2.345MetSer: 2.345 ± 0.0
1.407MetThr: 1.407 ± 0.0
1.407MetVal: 1.407 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.407MetTyr: 1.407 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.283AsnAla: 3.283 ± 0.0
1.407AsnCys: 1.407 ± 0.0
4.221AsnAsp: 4.221 ± 0.0
1.407AsnGlu: 1.407 ± 0.0
1.876AsnPhe: 1.876 ± 0.0
6.567AsnGly: 6.567 ± 0.0
0.0AsnHis: 0.0 ± 0.0
1.876AsnIle: 1.876 ± 0.0
3.283AsnLys: 3.283 ± 0.0
2.345AsnLeu: 2.345 ± 0.0
0.938AsnMet: 0.938 ± 0.0
1.876AsnAsn: 1.876 ± 0.0
2.345AsnPro: 2.345 ± 0.0
1.876AsnGln: 1.876 ± 0.0
1.407AsnArg: 1.407 ± 0.0
4.69AsnSer: 4.69 ± 0.0
3.283AsnThr: 3.283 ± 0.0
3.283AsnVal: 3.283 ± 0.0
2.814AsnTrp: 2.814 ± 0.0
0.469AsnTyr: 0.469 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.345ProAla: 2.345 ± 0.0
0.938ProCys: 0.938 ± 0.0
1.407ProAsp: 1.407 ± 0.0
3.283ProGlu: 3.283 ± 0.0
5.159ProPhe: 5.159 ± 0.0
4.69ProGly: 4.69 ± 0.0
0.938ProHis: 0.938 ± 0.0
3.283ProIle: 3.283 ± 0.0
2.814ProLys: 2.814 ± 0.0
3.752ProLeu: 3.752 ± 0.0
1.407ProMet: 1.407 ± 0.0
1.407ProAsn: 1.407 ± 0.0
0.938ProPro: 0.938 ± 0.0
0.938ProGln: 0.938 ± 0.0
1.407ProArg: 1.407 ± 0.0
3.752ProSer: 3.752 ± 0.0
1.407ProThr: 1.407 ± 0.0
3.752ProVal: 3.752 ± 0.0
0.469ProTrp: 0.469 ± 0.0
4.221ProTyr: 4.221 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.876GlnAla: 1.876 ± 0.0
1.876GlnCys: 1.876 ± 0.0
0.938GlnAsp: 0.938 ± 0.0
1.407GlnGlu: 1.407 ± 0.0
2.814GlnPhe: 2.814 ± 0.0
3.752GlnGly: 3.752 ± 0.0
1.876GlnHis: 1.876 ± 0.0
0.0GlnIle: 0.0 ± 0.0
0.469GlnLys: 0.469 ± 0.0
4.69GlnLeu: 4.69 ± 0.0
0.469GlnMet: 0.469 ± 0.0
2.814GlnAsn: 2.814 ± 0.0
1.407GlnPro: 1.407 ± 0.0
0.0GlnGln: 0.0 ± 0.0
1.407GlnArg: 1.407 ± 0.0
1.876GlnSer: 1.876 ± 0.0
1.876GlnThr: 1.876 ± 0.0
0.938GlnVal: 0.938 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
0.469GlnTyr: 0.469 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.814ArgAla: 2.814 ± 0.0
0.469ArgCys: 0.469 ± 0.0
2.814ArgAsp: 2.814 ± 0.0
3.752ArgGlu: 3.752 ± 0.0
1.407ArgPhe: 1.407 ± 0.0
4.69ArgGly: 4.69 ± 0.0
0.0ArgHis: 0.0 ± 0.0
0.469ArgIle: 0.469 ± 0.0
1.876ArgLys: 1.876 ± 0.0
3.283ArgLeu: 3.283 ± 0.0
0.469ArgMet: 0.469 ± 0.0
2.345ArgAsn: 2.345 ± 0.0
1.407ArgPro: 1.407 ± 0.0
1.407ArgGln: 1.407 ± 0.0
3.283ArgArg: 3.283 ± 0.0
1.876ArgSer: 1.876 ± 0.0
3.283ArgThr: 3.283 ± 0.0
3.752ArgVal: 3.752 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
1.876ArgTyr: 1.876 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.098SerAla: 6.098 ± 0.0
0.938SerCys: 0.938 ± 0.0
6.098SerAsp: 6.098 ± 0.0
3.283SerGlu: 3.283 ± 0.0
7.036SerPhe: 7.036 ± 0.0
4.221SerGly: 4.221 ± 0.0
1.876SerHis: 1.876 ± 0.0
4.221SerIle: 4.221 ± 0.0
5.159SerLys: 5.159 ± 0.0
4.221SerLeu: 4.221 ± 0.0
4.221SerMet: 4.221 ± 0.0
1.876SerAsn: 1.876 ± 0.0
3.283SerPro: 3.283 ± 0.0
5.159SerGln: 5.159 ± 0.0
2.345SerArg: 2.345 ± 0.0
6.567SerSer: 6.567 ± 0.0
3.283SerThr: 3.283 ± 0.0
8.443SerVal: 8.443 ± 0.0
0.938SerTrp: 0.938 ± 0.0
1.876SerTyr: 1.876 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.221ThrAla: 4.221 ± 0.0
2.345ThrCys: 2.345 ± 0.0
2.345ThrAsp: 2.345 ± 0.0
0.938ThrGlu: 0.938 ± 0.0
3.283ThrPhe: 3.283 ± 0.0
1.876ThrGly: 1.876 ± 0.0
3.283ThrHis: 3.283 ± 0.0
0.938ThrIle: 0.938 ± 0.0
3.283ThrLys: 3.283 ± 0.0
6.567ThrLeu: 6.567 ± 0.0
1.407ThrMet: 1.407 ± 0.0
2.345ThrAsn: 2.345 ± 0.0
1.876ThrPro: 1.876 ± 0.0
0.0ThrGln: 0.0 ± 0.0
3.752ThrArg: 3.752 ± 0.0
5.629ThrSer: 5.629 ± 0.0
7.505ThrThr: 7.505 ± 0.0
5.159ThrVal: 5.159 ± 0.0
1.407ThrTrp: 1.407 ± 0.0
1.876ThrTyr: 1.876 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.221ValAla: 4.221 ± 0.0
2.345ValCys: 2.345 ± 0.0
5.629ValAsp: 5.629 ± 0.0
3.283ValGlu: 3.283 ± 0.0
4.221ValPhe: 4.221 ± 0.0
4.221ValGly: 4.221 ± 0.0
1.407ValHis: 1.407 ± 0.0
3.283ValIle: 3.283 ± 0.0
2.814ValLys: 2.814 ± 0.0
10.788ValLeu: 10.788 ± 0.0
0.938ValMet: 0.938 ± 0.0
4.69ValAsn: 4.69 ± 0.0
3.752ValPro: 3.752 ± 0.0
0.938ValGln: 0.938 ± 0.0
4.69ValArg: 4.69 ± 0.0
5.159ValSer: 5.159 ± 0.0
3.752ValThr: 3.752 ± 0.0
5.629ValVal: 5.629 ± 0.0
0.469ValTrp: 0.469 ± 0.0
3.752ValTyr: 3.752 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.469TrpAla: 0.469 ± 0.0
0.938TrpCys: 0.938 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.469TrpGlu: 0.469 ± 0.0
0.469TrpPhe: 0.469 ± 0.0
0.938TrpGly: 0.938 ± 0.0
0.469TrpHis: 0.469 ± 0.0
1.407TrpIle: 1.407 ± 0.0
1.407TrpLys: 1.407 ± 0.0
0.938TrpLeu: 0.938 ± 0.0
0.469TrpMet: 0.469 ± 0.0
1.407TrpAsn: 1.407 ± 0.0
0.938TrpPro: 0.938 ± 0.0
1.407TrpGln: 1.407 ± 0.0
1.407TrpArg: 1.407 ± 0.0
0.938TrpSer: 0.938 ± 0.0
0.0TrpThr: 0.0 ± 0.0
1.407TrpVal: 1.407 ± 0.0
0.469TrpTrp: 0.469 ± 0.0
0.469TrpTyr: 0.469 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.938TyrAla: 0.938 ± 0.0
2.345TyrCys: 2.345 ± 0.0
4.221TyrAsp: 4.221 ± 0.0
1.876TyrGlu: 1.876 ± 0.0
1.876TyrPhe: 1.876 ± 0.0
3.752TyrGly: 3.752 ± 0.0
0.0TyrHis: 0.0 ± 0.0
2.345TyrIle: 2.345 ± 0.0
3.283TyrLys: 3.283 ± 0.0
1.407TyrLeu: 1.407 ± 0.0
0.0TyrMet: 0.0 ± 0.0
3.283TyrAsn: 3.283 ± 0.0
1.876TyrPro: 1.876 ± 0.0
1.407TyrGln: 1.407 ± 0.0
0.938TyrArg: 0.938 ± 0.0
1.876TyrSer: 1.876 ± 0.0
4.221TyrThr: 4.221 ± 0.0
2.345TyrVal: 2.345 ± 0.0
0.469TyrTrp: 0.469 ± 0.0
0.469TyrTyr: 0.469 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2133 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski