Amino acid dipepetide frequency for Ustilaginoidea virens RNA virus 5

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
16.718AlaAla: 16.718 ± 1.446
1.858AlaCys: 1.858 ± 0.529
1.858AlaAsp: 1.858 ± 0.529
9.907AlaGlu: 9.907 ± 0.43
3.715AlaPhe: 3.715 ± 0.171
8.669AlaGly: 8.669 ± 0.4
4.334AlaHis: 4.334 ± 0.643
2.477AlaIle: 2.477 ± 1.659
4.334AlaLys: 4.334 ± 0.643
12.384AlaLeu: 12.384 ± 1.457
1.858AlaMet: 1.858 ± 1.244
3.715AlaAsn: 3.715 ± 1.058
6.192AlaPro: 6.192 ± 3.832
2.477AlaGln: 2.477 ± 1.887
9.907AlaArg: 9.907 ± 2.203
11.765AlaSer: 11.765 ± 1.872
6.192AlaThr: 6.192 ± 1.172
9.907AlaVal: 9.907 ± 1.343
1.858AlaTrp: 1.858 ± 0.358
3.096AlaTyr: 3.096 ± 0.586
0.0AlaXaa: 0.0 ± 0.0
Cys
2.477CysAla: 2.477 ± 0.772
0.0CysCys: 0.0 ± 0.0
3.715CysAsp: 3.715 ± 0.715
0.619CysGlu: 0.619 ± 0.415
0.619CysPhe: 0.619 ± 0.415
2.477CysGly: 2.477 ± 1.887
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.619CysLys: 0.619 ± 0.415
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.858CysPro: 1.858 ± 0.358
0.619CysGln: 0.619 ± 0.415
0.619CysArg: 0.619 ± 0.415
1.858CysSer: 1.858 ± 0.358
1.238CysThr: 1.238 ± 0.057
1.238CysVal: 1.238 ± 0.829
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.715AspAla: 3.715 ± 1.058
0.0AspCys: 0.0 ± 0.0
6.811AspAsp: 6.811 ± 1.644
1.858AspGlu: 1.858 ± 0.529
0.619AspPhe: 0.619 ± 0.415
3.715AspGly: 3.715 ± 1.058
0.0AspHis: 0.0 ± 0.0
0.619AspIle: 0.619 ± 0.415
0.0AspLys: 0.0 ± 0.0
4.954AspLeu: 4.954 ± 0.658
0.0AspMet: 0.0 ± 0.0
1.858AspAsn: 1.858 ± 0.529
6.192AspPro: 6.192 ± 2.374
1.238AspGln: 1.238 ± 0.057
3.715AspArg: 3.715 ± 0.715
4.334AspSer: 4.334 ± 0.643
3.096AspThr: 3.096 ± 0.301
8.669AspVal: 8.669 ± 2.173
1.238AspTrp: 1.238 ± 0.829
1.858AspTyr: 1.858 ± 0.358
0.0AspXaa: 0.0 ± 0.0
Glu
4.954GluAla: 4.954 ± 0.228
0.0GluCys: 0.0 ± 0.0
1.238GluAsp: 1.238 ± 0.944
4.954GluGlu: 4.954 ± 1.545
2.477GluPhe: 2.477 ± 0.772
8.05GluGly: 8.05 ± 0.814
0.619GluHis: 0.619 ± 0.415
1.858GluIle: 1.858 ± 0.358
2.477GluLys: 2.477 ± 0.772
6.811GluLeu: 6.811 ± 2.789
1.858GluMet: 1.858 ± 0.364
0.619GluAsn: 0.619 ± 0.415
1.858GluPro: 1.858 ± 1.415
2.477GluGln: 2.477 ± 0.772
4.954GluArg: 4.954 ± 0.658
0.619GluSer: 0.619 ± 0.472
4.334GluThr: 4.334 ± 0.243
6.192GluVal: 6.192 ± 1.172
0.0GluTrp: 0.0 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.096PheAla: 3.096 ± 0.586
0.0PheCys: 0.0 ± 0.0
2.477PheAsp: 2.477 ± 0.114
0.619PheGlu: 0.619 ± 0.415
0.619PhePhe: 0.619 ± 0.415
0.619PheGly: 0.619 ± 0.472
0.619PheHis: 0.619 ± 0.472
0.619PheIle: 0.619 ± 0.472
0.0PheLys: 0.0 ± 0.0
1.238PheLeu: 1.238 ± 0.057
0.0PheMet: 0.0 ± 0.0
2.477PheAsn: 2.477 ± 0.772
2.477PhePro: 2.477 ± 1.659
0.0PheGln: 0.0 ± 0.0
1.858PheArg: 1.858 ± 0.529
4.954PheSer: 4.954 ± 2.888
0.619PheThr: 0.619 ± 0.472
0.619PheVal: 0.619 ± 0.472
1.238PheTrp: 1.238 ± 0.057
1.238PheTyr: 1.238 ± 0.829
0.0PheXaa: 0.0 ± 0.0
Gly
12.384GlyAla: 12.384 ± 0.571
2.477GlyCys: 2.477 ± 0.772
3.096GlyAsp: 3.096 ± 1.187
4.954GlyGlu: 4.954 ± 2.888
0.619GlyPhe: 0.619 ± 0.472
11.146GlyGly: 11.146 ± 3.173
3.715GlyHis: 3.715 ± 0.171
3.096GlyIle: 3.096 ± 0.301
3.715GlyLys: 3.715 ± 1.602
9.907GlyLeu: 9.907 ± 1.343
2.477GlyMet: 2.477 ± 0.772
1.238GlyAsn: 1.238 ± 0.057
5.573GlyPro: 5.573 ± 1.587
3.096GlyGln: 3.096 ± 0.586
8.669GlyArg: 8.669 ± 0.4
2.477GlySer: 2.477 ± 0.772
6.192GlyThr: 6.192 ± 2.059
9.907GlyVal: 9.907 ± 0.457
1.238GlyTrp: 1.238 ± 0.829
4.334GlyTyr: 4.334 ± 1.53
0.0GlyXaa: 0.0 ± 0.0
His
3.096HisAla: 3.096 ± 1.473
2.477HisCys: 2.477 ± 1.001
0.619HisAsp: 0.619 ± 0.472
0.0HisGlu: 0.0 ± 0.0
0.619HisPhe: 0.619 ± 0.472
1.858HisGly: 1.858 ± 0.529
1.238HisHis: 1.238 ± 0.057
0.619HisIle: 0.619 ± 0.472
0.619HisLys: 0.619 ± 0.472
4.954HisLeu: 4.954 ± 0.658
0.619HisMet: 0.619 ± 0.415
1.238HisAsn: 1.238 ± 0.057
0.619HisPro: 0.619 ± 0.472
0.0HisGln: 0.0 ± 0.0
1.238HisArg: 1.238 ± 0.057
0.619HisSer: 0.619 ± 0.415
0.619HisThr: 0.619 ± 0.472
0.619HisVal: 0.619 ± 0.415
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.477IleAla: 2.477 ± 1.001
0.619IleCys: 0.619 ± 0.472
0.619IleAsp: 0.619 ± 0.415
0.619IleGlu: 0.619 ± 0.472
0.619IlePhe: 0.619 ± 0.415
3.096IleGly: 3.096 ± 0.301
0.619IleHis: 0.619 ± 0.472
1.238IleIle: 1.238 ± 0.057
1.238IleLys: 1.238 ± 0.829
3.715IleLeu: 3.715 ± 0.171
0.0IleMet: 0.0 ± 0.0
1.858IleAsn: 1.858 ± 1.244
1.238IlePro: 1.238 ± 0.057
0.0IleGln: 0.0 ± 0.0
4.334IleArg: 4.334 ± 0.243
2.477IleSer: 2.477 ± 0.114
0.0IleThr: 0.0 ± 0.0
1.238IleVal: 1.238 ± 0.057
0.0IleTrp: 0.0 ± 0.0
0.619IleTyr: 0.619 ± 0.415
0.0IleXaa: 0.0 ± 0.0
Lys
3.715LysAla: 3.715 ± 2.488
0.0LysCys: 0.0 ± 0.0
0.619LysAsp: 0.619 ± 0.415
0.619LysGlu: 0.619 ± 0.415
1.858LysPhe: 1.858 ± 0.529
3.096LysGly: 3.096 ± 0.586
0.0LysHis: 0.0 ± 0.0
0.619LysIle: 0.619 ± 0.415
0.0LysLys: 0.0 ± 0.0
3.096LysLeu: 3.096 ± 0.301
0.0LysMet: 0.0 ± 0.0
0.0LysAsn: 0.0 ± 0.0
0.619LysPro: 0.619 ± 0.472
0.619LysGln: 0.619 ± 0.415
1.238LysArg: 1.238 ± 0.944
1.858LysSer: 1.858 ± 0.358
3.096LysThr: 3.096 ± 2.074
4.334LysVal: 4.334 ± 2.903
0.0LysTrp: 0.0 ± 0.0
1.238LysTyr: 1.238 ± 0.944
0.0LysXaa: 0.0 ± 0.0
Leu
16.099LeuAla: 16.099 ± 1.031
1.858LeuCys: 1.858 ± 0.358
6.192LeuAsp: 6.192 ± 1.488
5.573LeuGlu: 5.573 ± 1.073
1.238LeuPhe: 1.238 ± 0.944
8.05LeuGly: 8.05 ± 0.072
2.477LeuHis: 2.477 ± 1.001
2.477LeuIle: 2.477 ± 0.772
3.096LeuLys: 3.096 ± 1.187
12.384LeuLeu: 12.384 ± 1.202
0.619LeuMet: 0.619 ± 0.415
2.477LeuAsn: 2.477 ± 0.114
3.715LeuPro: 3.715 ± 0.171
2.477LeuGln: 2.477 ± 0.114
9.288LeuArg: 9.288 ± 1.788
6.811LeuSer: 6.811 ± 1.902
4.334LeuThr: 4.334 ± 0.643
9.288LeuVal: 9.288 ± 0.902
1.238LeuTrp: 1.238 ± 0.057
0.619LeuTyr: 0.619 ± 0.472
0.0LeuXaa: 0.0 ± 0.0
Met
3.715MetAla: 3.715 ± 1.058
0.0MetCys: 0.0 ± 0.0
0.619MetAsp: 0.619 ± 0.415
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
1.238MetGly: 1.238 ± 0.829
0.619MetHis: 0.619 ± 0.415
0.619MetIle: 0.619 ± 0.472
0.0MetLys: 0.0 ± 0.0
2.477MetLeu: 2.477 ± 1.659
0.0MetMet: 0.0 ± 0.3
0.619MetAsn: 0.619 ± 0.415
0.619MetPro: 0.619 ± 0.415
0.0MetGln: 0.0 ± 0.0
0.619MetArg: 0.619 ± 0.415
1.238MetSer: 1.238 ± 0.829
1.238MetThr: 1.238 ± 0.057
1.858MetVal: 1.858 ± 0.358
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.096AsnAla: 3.096 ± 0.301
0.619AsnCys: 0.619 ± 0.415
0.619AsnAsp: 0.619 ± 0.472
1.858AsnGlu: 1.858 ± 0.529
1.858AsnPhe: 1.858 ± 1.415
1.858AsnGly: 1.858 ± 0.358
0.0AsnHis: 0.0 ± 0.0
0.0AsnIle: 0.0 ± 0.0
0.619AsnLys: 0.619 ± 0.472
1.238AsnLeu: 1.238 ± 0.944
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
1.238AsnPro: 1.238 ± 0.829
0.0AsnGln: 0.0 ± 0.0
3.096AsnArg: 3.096 ± 1.187
2.477AsnSer: 2.477 ± 1.659
2.477AsnThr: 2.477 ± 0.114
1.238AsnVal: 1.238 ± 0.829
0.619AsnTrp: 0.619 ± 0.415
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
9.907ProAla: 9.907 ± 2.23
0.619ProCys: 0.619 ± 0.415
3.096ProAsp: 3.096 ± 1.473
4.334ProGlu: 4.334 ± 2.017
0.0ProPhe: 0.0 ± 0.0
9.907ProGly: 9.907 ± 3.116
0.0ProHis: 0.0 ± 0.0
1.238ProIle: 1.238 ± 0.944
1.238ProLys: 1.238 ± 0.829
4.334ProLeu: 4.334 ± 0.243
0.0ProMet: 0.0 ± 0.0
0.0ProAsn: 0.0 ± 0.0
1.858ProPro: 1.858 ± 0.358
1.238ProGln: 1.238 ± 0.829
3.715ProArg: 3.715 ± 1.058
3.096ProSer: 3.096 ± 0.301
3.096ProThr: 3.096 ± 0.586
4.334ProVal: 4.334 ± 0.243
0.0ProTrp: 0.0 ± 0.0
2.477ProTyr: 2.477 ± 0.114
0.0ProXaa: 0.0 ± 0.0
Gln
2.477GlnAla: 2.477 ± 1.001
0.0GlnCys: 0.0 ± 0.0
0.619GlnAsp: 0.619 ± 0.472
0.619GlnGlu: 0.619 ± 0.472
0.619GlnPhe: 0.619 ± 0.415
3.096GlnGly: 3.096 ± 1.473
0.0GlnHis: 0.0 ± 0.0
1.858GlnIle: 1.858 ± 0.529
0.0GlnLys: 0.0 ± 0.0
2.477GlnLeu: 2.477 ± 0.772
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
0.619GlnPro: 0.619 ± 0.415
0.0GlnGln: 0.0 ± 0.0
1.858GlnArg: 1.858 ± 0.529
2.477GlnSer: 2.477 ± 0.772
0.619GlnThr: 0.619 ± 0.472
1.238GlnVal: 1.238 ± 0.829
0.619GlnTrp: 0.619 ± 0.415
0.619GlnTyr: 0.619 ± 0.472
0.0GlnXaa: 0.0 ± 0.0
Arg
9.907ArgAla: 9.907 ± 1.316
2.477ArgCys: 2.477 ± 1.659
6.192ArgAsp: 6.192 ± 0.285
6.192ArgGlu: 6.192 ± 1.488
3.096ArgPhe: 3.096 ± 0.586
8.669ArgGly: 8.669 ± 1.286
2.477ArgHis: 2.477 ± 1.887
2.477ArgIle: 2.477 ± 0.772
3.715ArgLys: 3.715 ± 0.171
5.573ArgLeu: 5.573 ± 0.186
1.238ArgMet: 1.238 ± 0.829
0.619ArgAsn: 0.619 ± 0.472
4.954ArgPro: 4.954 ± 1.115
2.477ArgGln: 2.477 ± 1.001
8.669ArgArg: 8.669 ± 1.373
3.715ArgSer: 3.715 ± 2.488
3.096ArgThr: 3.096 ± 0.301
6.811ArgVal: 6.811 ± 1.016
1.238ArgTrp: 1.238 ± 0.829
1.858ArgTyr: 1.858 ± 0.358
0.0ArgXaa: 0.0 ± 0.0
Ser
8.669SerAla: 8.669 ± 2.173
0.619SerCys: 0.619 ± 0.415
1.858SerAsp: 1.858 ± 0.358
3.096SerGlu: 3.096 ± 0.301
0.619SerPhe: 0.619 ± 0.415
8.669SerGly: 8.669 ± 1.373
1.238SerHis: 1.238 ± 0.829
1.238SerIle: 1.238 ± 0.057
1.238SerLys: 1.238 ± 0.829
8.05SerLeu: 8.05 ± 1.845
3.715SerMet: 3.715 ± 1.602
3.096SerAsn: 3.096 ± 0.301
2.477SerPro: 2.477 ± 1.001
1.238SerGln: 1.238 ± 0.944
4.954SerArg: 4.954 ± 0.658
4.954SerSer: 4.954 ± 1.115
3.096SerThr: 3.096 ± 1.473
6.811SerVal: 6.811 ± 0.129
0.619SerTrp: 0.619 ± 0.472
3.096SerTyr: 3.096 ± 0.301
0.0SerXaa: 0.0 ± 0.0
Thr
6.192ThrAla: 6.192 ± 3.832
0.619ThrCys: 0.619 ± 0.415
4.334ThrAsp: 4.334 ± 1.13
0.619ThrGlu: 0.619 ± 0.415
1.238ThrPhe: 1.238 ± 0.944
3.715ThrGly: 3.715 ± 1.058
0.0ThrHis: 0.0 ± 0.0
1.238ThrIle: 1.238 ± 0.944
0.619ThrLys: 0.619 ± 0.415
3.096ThrLeu: 3.096 ± 2.074
1.238ThrMet: 1.238 ± 0.944
0.619ThrAsn: 0.619 ± 0.415
6.192ThrPro: 6.192 ± 0.285
0.0ThrGln: 0.0 ± 0.0
5.573ThrArg: 5.573 ± 0.7
3.715ThrSer: 3.715 ± 1.944
1.238ThrThr: 1.238 ± 0.057
6.192ThrVal: 6.192 ± 1.172
1.858ThrTrp: 1.858 ± 1.244
1.238ThrTyr: 1.238 ± 0.057
0.0ThrXaa: 0.0 ± 0.0
Val
6.811ValAla: 6.811 ± 0.757
2.477ValCys: 2.477 ± 0.772
7.43ValAsp: 7.43 ± 2.116
6.811ValGlu: 6.811 ± 0.129
4.334ValPhe: 4.334 ± 0.243
9.907ValGly: 9.907 ± 3.089
3.715ValHis: 3.715 ± 1.058
1.858ValIle: 1.858 ± 0.529
2.477ValLys: 2.477 ± 0.772
9.907ValLeu: 9.907 ± 0.457
1.858ValMet: 1.858 ± 0.358
1.858ValAsn: 1.858 ± 1.244
3.715ValPro: 3.715 ± 0.171
1.238ValGln: 1.238 ± 0.057
8.669ValArg: 8.669 ± 0.487
8.05ValSer: 8.05 ± 0.959
1.858ValThr: 1.858 ± 0.529
8.669ValVal: 8.669 ± 3.059
0.0ValTrp: 0.0 ± 0.0
1.238ValTyr: 1.238 ± 0.057
0.0ValXaa: 0.0 ± 0.0
Trp
0.619TrpAla: 0.619 ± 0.415
0.619TrpCys: 0.619 ± 0.415
0.619TrpAsp: 0.619 ± 0.415
1.238TrpGlu: 1.238 ± 0.057
0.0TrpPhe: 0.0 ± 0.0
1.238TrpGly: 1.238 ± 0.829
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.238TrpLeu: 1.238 ± 0.829
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.619TrpGln: 0.619 ± 0.415
0.619TrpArg: 0.619 ± 0.472
1.238TrpSer: 1.238 ± 0.829
0.619TrpThr: 0.619 ± 0.415
2.477TrpVal: 2.477 ± 0.772
0.0TrpTrp: 0.0 ± 0.0
0.619TrpTyr: 0.619 ± 0.472
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.096TyrAla: 3.096 ± 0.586
0.619TyrCys: 0.619 ± 0.472
1.858TyrAsp: 1.858 ± 0.358
1.858TyrGlu: 1.858 ± 0.529
0.619TyrPhe: 0.619 ± 0.472
1.238TyrGly: 1.238 ± 0.057
0.0TyrHis: 0.0 ± 0.0
2.477TyrIle: 2.477 ± 0.772
0.619TyrLys: 0.619 ± 0.415
2.477TyrLeu: 2.477 ± 0.114
0.0TyrMet: 0.0 ± 0.0
0.619TyrAsn: 0.619 ± 0.472
2.477TyrPro: 2.477 ± 0.114
0.0TyrGln: 0.0 ± 0.0
1.858TyrArg: 1.858 ± 0.358
0.619TyrSer: 0.619 ± 0.472
2.477TyrThr: 2.477 ± 1.001
1.238TyrVal: 1.238 ± 0.057
0.0TyrTrp: 0.0 ± 0.0
1.238TyrTyr: 1.238 ± 0.057
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1616 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski