Amino acid dipepetide frequency for Thrips-associated genomovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.521AlaAla: 3.521 ± 0.443
0.0AlaCys: 0.0 ± 0.0
5.869AlaAsp: 5.869 ± 1.425
7.042AlaGlu: 7.042 ± 3.1
2.347AlaPhe: 2.347 ± 1.083
7.042AlaGly: 7.042 ± 0.886
0.0AlaHis: 0.0 ± 0.0
2.347AlaIle: 2.347 ± 1.083
2.347AlaLys: 2.347 ± 1.682
5.869AlaLeu: 5.869 ± 1.425
1.174AlaMet: 1.174 ± 0.841
3.521AlaAsn: 3.521 ± 1.55
4.695AlaPro: 4.695 ± 1.714
5.869AlaGln: 5.869 ± 0.387
11.737AlaArg: 11.737 ± 3.781
4.695AlaSer: 4.695 ± 0.796
3.521AlaThr: 3.521 ± 2.524
8.216AlaVal: 8.216 ± 3.547
3.521AlaTrp: 3.521 ± 1.55
1.174AlaTyr: 1.174 ± 0.841
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.174CysAsp: 1.174 ± 0.914
0.0CysGlu: 0.0 ± 0.0
1.174CysPhe: 1.174 ± 0.841
2.347CysGly: 2.347 ± 1.083
0.0CysHis: 0.0 ± 0.0
4.695CysIle: 4.695 ± 0.754
0.0CysLys: 0.0 ± 0.0
1.174CysLeu: 1.174 ± 0.914
0.0CysMet: 0.0 ± 0.0
1.174CysAsn: 1.174 ± 0.914
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.174CysSer: 1.174 ± 0.841
2.347CysThr: 2.347 ± 1.083
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.174AspAla: 1.174 ± 0.914
0.0AspCys: 0.0 ± 0.0
8.216AspAsp: 8.216 ± 1.886
3.521AspGlu: 3.521 ± 0.443
3.521AspPhe: 3.521 ± 1.55
4.695AspGly: 4.695 ± 2.167
2.347AspHis: 2.347 ± 1.083
0.0AspIle: 0.0 ± 0.0
4.695AspLys: 4.695 ± 0.796
8.216AspLeu: 8.216 ± 0.976
2.347AspMet: 2.347 ± 1.828
1.174AspAsn: 1.174 ± 0.841
8.216AspPro: 8.216 ± 2.288
0.0AspGln: 0.0 ± 0.0
2.347AspArg: 2.347 ± 1.682
0.0AspSer: 0.0 ± 0.0
7.042AspThr: 7.042 ± 2.399
5.869AspVal: 5.869 ± 2.513
4.695AspTrp: 4.695 ± 0.754
4.695AspTyr: 4.695 ± 0.796
0.0AspXaa: 0.0 ± 0.0
Glu
2.347GluAla: 2.347 ± 1.083
2.347GluCys: 2.347 ± 1.083
1.174GluAsp: 1.174 ± 0.914
0.0GluGlu: 0.0 ± 0.0
0.0GluPhe: 0.0 ± 0.0
5.869GluGly: 5.869 ± 2.513
2.347GluHis: 2.347 ± 1.083
3.521GluIle: 3.521 ± 1.55
1.174GluLys: 1.174 ± 0.841
2.347GluLeu: 2.347 ± 1.083
0.0GluMet: 0.0 ± 0.0
2.347GluAsn: 2.347 ± 1.682
3.521GluPro: 3.521 ± 1.55
2.347GluGln: 2.347 ± 1.083
4.695GluArg: 4.695 ± 2.167
4.695GluSer: 4.695 ± 2.167
4.695GluThr: 4.695 ± 3.365
1.174GluVal: 1.174 ± 0.914
2.347GluTrp: 2.347 ± 1.083
1.174GluTyr: 1.174 ± 0.914
0.0GluXaa: 0.0 ± 0.0
Phe
4.695PheAla: 4.695 ± 2.167
0.0PheCys: 0.0 ± 0.0
5.869PheAsp: 5.869 ± 0.387
2.347PheGlu: 2.347 ± 1.083
1.174PhePhe: 1.174 ± 0.914
5.869PheGly: 5.869 ± 2.513
1.174PheHis: 1.174 ± 0.841
1.174PheIle: 1.174 ± 0.914
1.174PheLys: 1.174 ± 0.841
3.521PheLeu: 3.521 ± 0.443
2.347PheMet: 2.347 ± 0.829
0.0PheAsn: 0.0 ± 0.0
0.0PhePro: 0.0 ± 0.0
1.174PheGln: 1.174 ± 0.914
3.521PheArg: 3.521 ± 0.443
3.521PheSer: 3.521 ± 2.524
3.521PheThr: 3.521 ± 0.443
2.347PheVal: 2.347 ± 1.083
2.347PheTrp: 2.347 ± 1.083
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
12.911GlyAla: 12.911 ± 2.219
0.0GlyCys: 0.0 ± 0.0
11.737GlyAsp: 11.737 ± 2.851
3.521GlyGlu: 3.521 ± 0.443
3.521GlyPhe: 3.521 ± 0.443
10.563GlyGly: 10.563 ± 4.603
0.0GlyHis: 0.0 ± 0.0
2.347GlyIle: 2.347 ± 0.829
4.695GlyLys: 4.695 ± 2.303
8.216GlyLeu: 8.216 ± 0.833
4.695GlyMet: 4.695 ± 0.796
7.042GlyAsn: 7.042 ± 1.156
1.174GlyPro: 1.174 ± 0.914
0.0GlyGln: 0.0 ± 0.0
8.216GlyArg: 8.216 ± 2.493
8.216GlySer: 8.216 ± 3.231
2.347GlyThr: 2.347 ± 1.083
2.347GlyVal: 2.347 ± 1.682
1.174GlyTrp: 1.174 ± 0.841
3.521GlyTyr: 3.521 ± 0.443
0.0GlyXaa: 0.0 ± 0.0
His
8.216HisAla: 8.216 ± 3.547
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.174HisGlu: 1.174 ± 0.841
3.521HisPhe: 3.521 ± 0.443
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
1.174HisIle: 1.174 ± 0.841
0.0HisLys: 0.0 ± 0.0
2.347HisLeu: 2.347 ± 1.083
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
4.695HisPro: 4.695 ± 1.714
0.0HisGln: 0.0 ± 0.0
1.174HisArg: 1.174 ± 0.841
1.174HisSer: 1.174 ± 0.914
0.0HisThr: 0.0 ± 0.0
1.174HisVal: 1.174 ± 0.914
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.521IleAla: 3.521 ± 0.443
1.174IleCys: 1.174 ± 0.841
2.347IleAsp: 2.347 ± 1.828
2.347IleGlu: 2.347 ± 0.829
1.174IlePhe: 1.174 ± 0.841
1.174IleGly: 1.174 ± 0.841
0.0IleHis: 0.0 ± 0.0
1.174IleIle: 1.174 ± 0.914
3.521IleLys: 3.521 ± 1.55
2.347IleLeu: 2.347 ± 1.682
0.0IleMet: 0.0 ± 0.0
0.0IleAsn: 0.0 ± 0.0
0.0IlePro: 0.0 ± 0.0
0.0IleGln: 0.0 ± 0.0
2.347IleArg: 2.347 ± 1.682
1.174IleSer: 1.174 ± 0.914
1.174IleThr: 1.174 ± 0.841
5.869IleVal: 5.869 ± 1.425
1.174IleTrp: 1.174 ± 0.914
1.174IleTyr: 1.174 ± 0.841
0.0IleXaa: 0.0 ± 0.0
Lys
2.347LysAla: 2.347 ± 1.083
0.0LysCys: 0.0 ± 0.0
2.347LysAsp: 2.347 ± 1.083
2.347LysGlu: 2.347 ± 0.829
9.39LysPhe: 9.39 ± 2.716
3.521LysGly: 3.521 ± 0.443
0.0LysHis: 0.0 ± 0.0
1.174LysIle: 1.174 ± 0.841
4.695LysLys: 4.695 ± 2.153
2.347LysLeu: 2.347 ± 0.829
1.174LysMet: 1.174 ± 0.713
0.0LysAsn: 0.0 ± 0.0
3.521LysPro: 3.521 ± 1.55
0.0LysGln: 0.0 ± 0.0
5.869LysArg: 5.869 ± 4.206
3.521LysSer: 3.521 ± 2.524
4.695LysThr: 4.695 ± 2.153
1.174LysVal: 1.174 ± 0.914
3.521LysTrp: 3.521 ± 1.55
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.042LeuAla: 7.042 ± 0.886
4.695LeuCys: 4.695 ± 2.303
5.869LeuAsp: 5.869 ± 1.425
2.347LeuGlu: 2.347 ± 0.829
4.695LeuPhe: 4.695 ± 0.796
7.042LeuGly: 7.042 ± 1.673
3.521LeuHis: 3.521 ± 2.178
0.0LeuIle: 0.0 ± 0.0
3.521LeuLys: 3.521 ± 2.524
4.695LeuLeu: 4.695 ± 3.365
1.174LeuMet: 1.174 ± 0.914
3.521LeuAsn: 3.521 ± 0.443
0.0LeuPro: 0.0 ± 0.0
0.0LeuGln: 0.0 ± 0.0
4.695LeuArg: 4.695 ± 2.167
1.174LeuSer: 1.174 ± 0.841
3.521LeuThr: 3.521 ± 2.524
4.695LeuVal: 4.695 ± 0.754
1.174LeuTrp: 1.174 ± 0.841
3.521LeuTyr: 3.521 ± 1.528
0.0LeuXaa: 0.0 ± 0.0
Met
1.174MetAla: 1.174 ± 0.841
0.0MetCys: 0.0 ± 0.0
1.174MetAsp: 1.174 ± 0.841
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
2.347MetGly: 2.347 ± 0.829
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.174MetLeu: 1.174 ± 0.841
0.0MetMet: 0.0 ± 0.0
1.174MetAsn: 1.174 ± 0.841
3.521MetPro: 3.521 ± 1.55
0.0MetGln: 0.0 ± 0.0
2.347MetArg: 2.347 ± 0.829
2.347MetSer: 2.347 ± 0.829
1.174MetThr: 1.174 ± 0.841
2.347MetVal: 2.347 ± 1.083
0.0MetTrp: 0.0 ± 0.0
1.174MetTyr: 1.174 ± 0.841
0.0MetXaa: 0.0 ± 0.0
Asn
4.695AsnAla: 4.695 ± 2.167
1.174AsnCys: 1.174 ± 0.914
2.347AsnAsp: 2.347 ± 1.083
1.174AsnGlu: 1.174 ± 0.914
3.521AsnPhe: 3.521 ± 0.443
8.216AsnGly: 8.216 ± 0.976
1.174AsnHis: 1.174 ± 0.914
3.521AsnIle: 3.521 ± 0.443
1.174AsnLys: 1.174 ± 0.841
3.521AsnLeu: 3.521 ± 0.443
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
3.521AsnPro: 3.521 ± 2.524
1.174AsnGln: 1.174 ± 0.841
1.174AsnArg: 1.174 ± 0.841
2.347AsnSer: 2.347 ± 1.682
2.347AsnThr: 2.347 ± 0.829
2.347AsnVal: 2.347 ± 1.682
1.174AsnTrp: 1.174 ± 0.841
2.347AsnTyr: 2.347 ± 1.083
0.0AsnXaa: 0.0 ± 0.0
Pro
4.695ProAla: 4.695 ± 2.167
1.174ProCys: 1.174 ± 0.914
3.521ProAsp: 3.521 ± 1.55
4.695ProGlu: 4.695 ± 2.167
2.347ProPhe: 2.347 ± 1.083
1.174ProGly: 1.174 ± 1.271
0.0ProHis: 0.0 ± 0.0
0.0ProIle: 0.0 ± 0.0
2.347ProLys: 2.347 ± 1.083
1.174ProLeu: 1.174 ± 0.841
1.174ProMet: 1.174 ± 0.841
1.174ProAsn: 1.174 ± 0.841
2.347ProPro: 2.347 ± 1.083
0.0ProGln: 0.0 ± 0.0
2.347ProArg: 2.347 ± 0.829
7.042ProSer: 7.042 ± 0.886
2.347ProThr: 2.347 ± 0.829
2.347ProVal: 2.347 ± 0.829
3.521ProTrp: 3.521 ± 0.443
1.174ProTyr: 1.174 ± 0.841
0.0ProXaa: 0.0 ± 0.0
Gln
1.174GlnAla: 1.174 ± 0.914
2.347GlnCys: 2.347 ± 1.083
1.174GlnAsp: 1.174 ± 0.841
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
3.521GlnGly: 3.521 ± 2.524
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
0.0GlnLys: 0.0 ± 0.0
3.521GlnLeu: 3.521 ± 1.55
0.0GlnMet: 0.0 ± 0.0
1.174GlnAsn: 1.174 ± 0.841
0.0GlnPro: 0.0 ± 0.0
1.174GlnGln: 1.174 ± 0.841
1.174GlnArg: 1.174 ± 0.841
0.0GlnSer: 0.0 ± 0.0
0.0GlnThr: 0.0 ± 0.0
1.174GlnVal: 1.174 ± 0.914
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.174ArgAla: 1.174 ± 0.841
0.0ArgCys: 0.0 ± 0.0
3.521ArgAsp: 3.521 ± 1.528
2.347ArgGlu: 2.347 ± 1.083
1.174ArgPhe: 1.174 ± 0.841
4.695ArgGly: 4.695 ± 2.153
2.347ArgHis: 2.347 ± 1.083
0.0ArgIle: 0.0 ± 0.0
9.39ArgLys: 9.39 ± 1.812
5.869ArgLeu: 5.869 ± 1.577
0.0ArgMet: 0.0 ± 0.971
5.869ArgAsn: 5.869 ± 1.577
3.521ArgPro: 3.521 ± 0.443
0.0ArgGln: 0.0 ± 0.0
5.869ArgArg: 5.869 ± 4.206
8.216ArgSer: 8.216 ± 0.833
4.695ArgThr: 4.695 ± 2.153
7.042ArgVal: 7.042 ± 1.07
0.0ArgTrp: 0.0 ± 0.0
9.39ArgTyr: 9.39 ± 1.812
0.0ArgXaa: 0.0 ± 0.0
Ser
0.0SerAla: 0.0 ± 0.0
0.0SerCys: 0.0 ± 0.0
1.174SerAsp: 1.174 ± 0.841
4.695SerGlu: 4.695 ± 2.167
0.0SerPhe: 0.0 ± 0.0
12.911SerGly: 12.911 ± 3.972
3.521SerHis: 3.521 ± 1.55
4.695SerIle: 4.695 ± 2.153
2.347SerLys: 2.347 ± 1.083
5.869SerLeu: 5.869 ± 3.142
0.0SerMet: 0.0 ± 0.0
5.869SerAsn: 5.869 ± 1.577
2.347SerPro: 2.347 ± 1.682
1.174SerGln: 1.174 ± 0.841
5.869SerArg: 5.869 ± 1.577
8.216SerSer: 8.216 ± 4.601
4.695SerThr: 4.695 ± 3.365
3.521SerVal: 3.521 ± 0.443
0.0SerTrp: 0.0 ± 0.0
1.174SerTyr: 1.174 ± 0.841
0.0SerXaa: 0.0 ± 0.0
Thr
5.869ThrAla: 5.869 ± 4.206
0.0ThrCys: 0.0 ± 0.0
1.174ThrAsp: 1.174 ± 0.841
0.0ThrGlu: 0.0 ± 0.0
1.174ThrPhe: 1.174 ± 0.841
1.174ThrGly: 1.174 ± 0.841
2.347ThrHis: 2.347 ± 1.083
2.347ThrIle: 2.347 ± 1.682
4.695ThrLys: 4.695 ± 2.153
0.0ThrLeu: 0.0 ± 0.0
4.695ThrMet: 4.695 ± 2.245
5.869ThrAsn: 5.869 ± 1.577
1.174ThrPro: 1.174 ± 0.841
0.0ThrGln: 0.0 ± 0.0
3.521ThrArg: 3.521 ± 2.524
5.869ThrSer: 5.869 ± 2.955
8.216ThrThr: 8.216 ± 4.601
5.869ThrVal: 5.869 ± 0.387
2.347ThrTrp: 2.347 ± 0.829
5.869ThrTyr: 5.869 ± 1.425
0.0ThrXaa: 0.0 ± 0.0
Val
8.216ValAla: 8.216 ± 0.833
2.347ValCys: 2.347 ± 1.682
9.39ValAsp: 9.39 ± 1.592
5.869ValGlu: 5.869 ± 1.425
1.174ValPhe: 1.174 ± 0.914
5.869ValGly: 5.869 ± 2.513
2.347ValHis: 2.347 ± 0.829
0.0ValIle: 0.0 ± 0.0
2.347ValLys: 2.347 ± 1.828
2.347ValLeu: 2.347 ± 1.223
0.0ValMet: 0.0 ± 0.0
4.695ValAsn: 4.695 ± 2.167
2.347ValPro: 2.347 ± 1.083
2.347ValGln: 2.347 ± 0.829
1.174ValArg: 1.174 ± 0.914
2.347ValSer: 2.347 ± 1.083
4.695ValThr: 4.695 ± 0.754
3.521ValVal: 3.521 ± 1.55
0.0ValTrp: 0.0 ± 0.0
1.174ValTyr: 1.174 ± 0.914
0.0ValXaa: 0.0 ± 0.0
Trp
3.521TrpAla: 3.521 ± 1.55
0.0TrpCys: 0.0 ± 0.0
1.174TrpAsp: 1.174 ± 0.841
2.347TrpGlu: 2.347 ± 1.083
2.347TrpPhe: 2.347 ± 0.829
3.521TrpGly: 3.521 ± 1.55
2.347TrpHis: 2.347 ± 1.682
2.347TrpIle: 2.347 ± 0.829
1.174TrpLys: 1.174 ± 0.914
2.347TrpLeu: 2.347 ± 0.829
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
1.174TrpGln: 1.174 ± 0.841
2.347TrpArg: 2.347 ± 1.083
2.347TrpSer: 2.347 ± 1.083
0.0TrpThr: 0.0 ± 0.0
1.174TrpVal: 1.174 ± 1.271
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
8.216TyrAla: 8.216 ± 0.833
0.0TyrCys: 0.0 ± 0.0
3.521TyrAsp: 3.521 ± 0.443
2.347TyrGlu: 2.347 ± 1.083
3.521TyrPhe: 3.521 ± 1.55
4.695TyrGly: 4.695 ± 0.754
1.174TyrHis: 1.174 ± 0.841
1.174TyrIle: 1.174 ± 0.841
2.347TyrLys: 2.347 ± 1.682
0.0TyrLeu: 0.0 ± 0.0
0.0TyrMet: 0.0 ± 0.0
2.347TyrAsn: 2.347 ± 1.083
0.0TyrPro: 0.0 ± 0.0
0.0TyrGln: 0.0 ± 0.0
5.869TyrArg: 5.869 ± 0.387
0.0TyrSer: 0.0 ± 0.0
1.174TyrThr: 1.174 ± 0.841
0.0TyrVal: 0.0 ± 0.0
1.174TyrTrp: 1.174 ± 0.841
1.174TyrTyr: 1.174 ± 0.841
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (853 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski