Plantactinospora sp. CNZ320

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Plantactinospora; unclassified Plantactinospora

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7098 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N3S8S3|A0A2N3S8S3_9ACTN Dihydrofolate reductase OS=Plantactinospora sp. CNZ320 OX=2035246 GN=CLT71_3021 PE=4 SV=1
MM1 pKa = 7.12TPIRR5 pKa = 11.84LVLDD9 pKa = 3.79ATAITAYY16 pKa = 9.82AATSIAVGEE25 pKa = 4.57VISEE29 pKa = 4.16VAEE32 pKa = 3.84EE33 pKa = 3.85NAYY36 pKa = 10.69VGLPLGCLVTAYY48 pKa = 10.06RR49 pKa = 11.84QASEE53 pKa = 4.5DD54 pKa = 3.58QLPQIGVLVDD64 pKa = 3.54HH65 pKa = 7.1PSVVIVGTDD74 pKa = 3.36PADD77 pKa = 3.21WLAFAGLARR86 pKa = 11.84DD87 pKa = 4.31LGRR90 pKa = 11.84DD91 pKa = 3.25AAEE94 pKa = 4.21ALLLAVDD101 pKa = 3.43SDD103 pKa = 4.84GYY105 pKa = 11.71VLTSDD110 pKa = 3.65PGSYY114 pKa = 10.84GNPDD118 pKa = 4.69DD119 pKa = 5.98LPVIPII125 pKa = 4.07

Molecular weight: 12.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N3SD18|A0A2N3SD18_9ACTN RNA polymerase ECF family sigma subunit OS=Plantactinospora sp. CNZ320 OX=2035246 GN=CLT71_4542 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIIAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.67GRR40 pKa = 11.84TRR42 pKa = 11.84LSAA45 pKa = 3.71

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7098

0

7098

2359260

29

5479

332.4

35.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.552 ± 0.039

0.752 ± 0.008

5.93 ± 0.024

5.214 ± 0.027

2.619 ± 0.016

9.591 ± 0.03

2.019 ± 0.014

3.253 ± 0.02

1.483 ± 0.018

10.541 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.582 ± 0.01

1.85 ± 0.018

6.542 ± 0.027

2.763 ± 0.016

8.717 ± 0.033

4.888 ± 0.021

6.058 ± 0.027

8.911 ± 0.027

1.602 ± 0.012

2.132 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski