Trichococcus palustris

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Trichococcus

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2699 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A143YA43|A0A143YA43_9LACT ATP-dependent helicase/nuclease subunit A OS=Trichococcus palustris OX=140314 GN=addA PE=3 SV=1
MM1 pKa = 8.1IYY3 pKa = 10.46EE4 pKa = 4.42FRR6 pKa = 11.84LSLRR10 pKa = 11.84DD11 pKa = 2.87IGIPVWRR18 pKa = 11.84DD19 pKa = 3.06IQVDD23 pKa = 4.08CTDD26 pKa = 3.9SFHH29 pKa = 7.93DD30 pKa = 3.99FNTYY34 pKa = 9.1IQALFDD40 pKa = 3.35WSSIFEE46 pKa = 4.05HH47 pKa = 6.71RR48 pKa = 11.84FEE50 pKa = 4.08ITRR53 pKa = 11.84SGGVEE58 pKa = 3.88IPPVIIEE65 pKa = 4.12EE66 pKa = 4.31TSMDD70 pKa = 3.61EE71 pKa = 4.63YY72 pKa = 11.17EE73 pKa = 4.77ALDD76 pKa = 3.89EE77 pKa = 4.92EE78 pKa = 5.77GDD80 pKa = 3.73FADD83 pKa = 5.45AFSEE87 pKa = 4.71DD88 pKa = 4.12SFDD91 pKa = 3.88EE92 pKa = 4.56NYY94 pKa = 10.71EE95 pKa = 3.91LDD97 pKa = 3.71YY98 pKa = 11.82EE99 pKa = 4.37EE100 pKa = 6.18AFDD103 pKa = 3.92EE104 pKa = 5.16DD105 pKa = 4.57EE106 pKa = 4.02YY107 pKa = 11.64RR108 pKa = 11.84PIGSYY113 pKa = 10.36FVDD116 pKa = 3.48VGDD119 pKa = 3.77QATYY123 pKa = 9.54TYY125 pKa = 9.39FTDD128 pKa = 3.49AVLEE132 pKa = 4.01IEE134 pKa = 5.04IILTEE139 pKa = 4.01IVAAQEE145 pKa = 3.87DD146 pKa = 4.25ATYY149 pKa = 9.75PLCTGAEE156 pKa = 3.94NLAPEE161 pKa = 4.38EE162 pKa = 3.88MDD164 pKa = 3.91DD165 pKa = 5.81RR166 pKa = 11.84GDD168 pKa = 3.68ILQKK172 pKa = 9.82KK173 pKa = 9.57AKK175 pKa = 9.52LISVKK180 pKa = 10.55KK181 pKa = 9.23EE182 pKa = 3.61EE183 pKa = 4.47LVAAINKK190 pKa = 8.6EE191 pKa = 3.82LALLGDD197 pKa = 5.03AISYY201 pKa = 9.96DD202 pKa = 3.45SEE204 pKa = 4.6YY205 pKa = 11.3EE206 pKa = 4.07EE207 pKa = 4.64FQHH210 pKa = 7.19DD211 pKa = 3.86LHH213 pKa = 8.31FDD215 pKa = 3.48DD216 pKa = 6.44DD217 pKa = 4.74EE218 pKa = 6.6IYY220 pKa = 10.83DD221 pKa = 3.9EE222 pKa = 5.34PYY224 pKa = 10.68DD225 pKa = 4.29AEE227 pKa = 4.87SDD229 pKa = 3.97NSDD232 pKa = 3.55CC233 pKa = 5.85

Molecular weight: 26.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A143YKT4|A0A143YKT4_9LACT Phosphate-specific transport system accessory protein PhoU OS=Trichococcus palustris OX=140314 GN=Tpal_1395 PE=3 SV=1
MM1 pKa = 7.92PKK3 pKa = 10.12QKK5 pKa = 7.54THH7 pKa = 6.73RR8 pKa = 11.84GSAKK12 pKa = 9.69RR13 pKa = 11.84FKK15 pKa = 10.09RR16 pKa = 11.84TGNGGLKK23 pKa = 9.55RR24 pKa = 11.84WSAFTSHH31 pKa = 6.95RR32 pKa = 11.84FHH34 pKa = 7.48GKK36 pKa = 6.37TKK38 pKa = 9.57KK39 pKa = 9.4QRR41 pKa = 11.84RR42 pKa = 11.84QLRR45 pKa = 11.84QASMVSPSDD54 pKa = 3.3MKK56 pKa = 10.83RR57 pKa = 11.84ISQQLSQMRR66 pKa = 3.6

Molecular weight: 7.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2699

0

2699

820627

26

2918

304.0

33.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.128 ± 0.051

0.718 ± 0.013

5.504 ± 0.034

7.185 ± 0.051

4.45 ± 0.036

7.011 ± 0.043

1.871 ± 0.02

7.6 ± 0.044

6.592 ± 0.035

9.542 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.866 ± 0.022

4.415 ± 0.034

3.509 ± 0.026

3.568 ± 0.032

3.99 ± 0.034

5.837 ± 0.038

5.69 ± 0.037

6.98 ± 0.036

0.87 ± 0.015

3.668 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski