Gallaecimonas xiamenensis 3-C-1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Gallaecimonas; Gallaecimonas xiamenensis

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3798 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K2JXC7|K2JXC7_9GAMM M20_dimer domain-containing protein OS=Gallaecimonas xiamenensis 3-C-1 OX=745411 GN=B3C1_14545 PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 9.11KK3 pKa = 8.29TLTLALTSAAALVLTACGGSSGGDD27 pKa = 3.37DD28 pKa = 3.53TPSPQTARR36 pKa = 11.84LSISIGDD43 pKa = 4.13APVDD47 pKa = 3.37TADD50 pKa = 3.59QVVVTIDD57 pKa = 3.53NIVLKK62 pKa = 10.82RR63 pKa = 11.84EE64 pKa = 4.13GEE66 pKa = 4.04EE67 pKa = 4.41DD68 pKa = 3.5VVLPVRR74 pKa = 11.84DD75 pKa = 4.13ADD77 pKa = 4.0NQPVTLDD84 pKa = 3.53LLDD87 pKa = 3.9YY88 pKa = 11.0QGGDD92 pKa = 3.06VFVALNGVTIPAGTYY107 pKa = 9.75SDD109 pKa = 3.73VRR111 pKa = 11.84LDD113 pKa = 4.49ILDD116 pKa = 4.15EE117 pKa = 4.37DD118 pKa = 4.43TANSYY123 pKa = 10.94VDD125 pKa = 3.51ADD127 pKa = 4.0GGIHH131 pKa = 5.65EE132 pKa = 5.45LKK134 pKa = 10.88VPSDD138 pKa = 3.65EE139 pKa = 4.63LKK141 pKa = 11.19LGGFDD146 pKa = 3.74AAAGGQLAFTIDD158 pKa = 3.49FNLRR162 pKa = 11.84KK163 pKa = 10.18AMTYY167 pKa = 10.53NPGPDD172 pKa = 3.13RR173 pKa = 11.84YY174 pKa = 9.46ILKK177 pKa = 10.03PRR179 pKa = 11.84GIQLLEE185 pKa = 3.85TAILGQIGGEE195 pKa = 3.94VDD197 pKa = 3.08PALAEE202 pKa = 4.22SCNTGTDD209 pKa = 3.16NVNYY213 pKa = 10.0GFVYY217 pKa = 10.21LYY219 pKa = 10.47SGHH222 pKa = 7.54DD223 pKa = 3.89LTTLADD229 pKa = 3.82DD230 pKa = 4.81HH231 pKa = 7.06DD232 pKa = 4.33QGAAGAPEE240 pKa = 4.56GASIPVASMAVTLSDD255 pKa = 4.27DD256 pKa = 4.26ADD258 pKa = 4.02PATTDD263 pKa = 3.05PYY265 pKa = 10.25TYY267 pKa = 10.95KK268 pKa = 10.66FGLLMPGDD276 pKa = 3.7YY277 pKa = 10.17TLAFSCDD284 pKa = 3.95GINDD288 pKa = 3.78LPEE291 pKa = 5.38SYY293 pKa = 10.5EE294 pKa = 3.9GLTIPNPEE302 pKa = 4.0GLSYY306 pKa = 11.0EE307 pKa = 4.22LTLTDD312 pKa = 5.74GGDD315 pKa = 3.4LTQDD319 pKa = 3.13INSLSTGLL327 pKa = 3.8

Molecular weight: 34.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K2JLP1|K2JLP1_9GAMM Smr domain-containing protein OS=Gallaecimonas xiamenensis 3-C-1 OX=745411 GN=B3C1_04950 PE=4 SV=1
MM1 pKa = 7.14QRR3 pKa = 11.84TFQPSVIKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 9.2RR14 pKa = 11.84DD15 pKa = 3.06HH16 pKa = 6.58GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 8.96VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.39GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3798

0

3798

1224611

36

2797

322.4

35.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.088 ± 0.051

0.934 ± 0.015

5.879 ± 0.039

5.332 ± 0.038

3.703 ± 0.028

8.122 ± 0.038

2.149 ± 0.021

4.252 ± 0.031

4.154 ± 0.035

12.322 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.298 ± 0.02

3.002 ± 0.027

4.705 ± 0.029

5.137 ± 0.035

5.562 ± 0.037

5.687 ± 0.035

4.574 ± 0.031

6.851 ± 0.031

1.533 ± 0.017

2.717 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski