Chitinophaga sp. YR573

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga; unclassified Chitinophaga

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6483 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I0RVF3|A0A1I0RVF3_9BACT Uncharacterized protein OS=Chitinophaga sp. YR573 OX=1881040 GN=SAMN05428988_6014 PE=4 SV=1
MM1 pKa = 7.34YY2 pKa = 10.9NLTTSTALMKK12 pKa = 10.08NQKK15 pKa = 9.33AAQVLSDD22 pKa = 3.35QSLFSVLQNSQGQSLFFSIGDD43 pKa = 3.69DD44 pKa = 4.04AILYY48 pKa = 10.1LSAEE52 pKa = 4.2QDD54 pKa = 3.22NATTGWTPIDD64 pKa = 3.96LTTEE68 pKa = 4.2LAADD72 pKa = 3.83YY73 pKa = 9.62TGKK76 pKa = 8.3TVTAKK81 pKa = 10.07TFVVSQDD88 pKa = 2.88ATTGDD93 pKa = 3.7ILILQAIHH101 pKa = 5.84VAEE104 pKa = 4.99DD105 pKa = 3.39NADD108 pKa = 3.72YY109 pKa = 11.1LYY111 pKa = 10.42MLSGLSNAPDD121 pKa = 4.09AAWLTASSNRR131 pKa = 11.84SWTARR136 pKa = 11.84LYY138 pKa = 11.11DD139 pKa = 3.75DD140 pKa = 4.04TADD143 pKa = 3.75PVSNTDD149 pKa = 2.7IAYY152 pKa = 9.82INIALNQDD160 pKa = 4.84PIQAPYY166 pKa = 10.4VIVGLQDD173 pKa = 3.09QATTFIQNYY182 pKa = 7.77VVSIDD187 pKa = 3.46PTTTTGIWTKK197 pKa = 11.13YY198 pKa = 6.48EE199 pKa = 3.71TAEE202 pKa = 5.11NYY204 pKa = 8.99DD205 pKa = 3.48QLYY208 pKa = 10.76GMAIGKK214 pKa = 8.81AQAAMFAGLYY224 pKa = 9.47EE225 pKa = 5.39LYY227 pKa = 9.95TLNDD231 pKa = 3.45NTSLTFTPLKK241 pKa = 10.72SVFGPPDD248 pKa = 4.0IIKK251 pKa = 8.46LTPPDD256 pKa = 3.8GATAIATMPPDD267 pKa = 3.35SSGNTNLYY275 pKa = 9.66VAGTGAIYY283 pKa = 10.45LFSPDD288 pKa = 3.37QQLNDD293 pKa = 3.48ATGTAVITNDD303 pKa = 3.94LIVGVEE309 pKa = 4.04YY310 pKa = 10.5FKK312 pKa = 11.2VHH314 pKa = 5.51QSGNQVTLWGKK325 pKa = 10.27DD326 pKa = 3.2NEE328 pKa = 4.49GTVFYY333 pKa = 10.91SRR335 pKa = 11.84CDD337 pKa = 3.13VDD339 pKa = 4.16NQTDD343 pKa = 3.82PGSWSCPLPLLVQVEE358 pKa = 4.35QLASLLDD365 pKa = 3.5IQTQSSVLYY374 pKa = 10.58AHH376 pKa = 6.25TTGQSLVKK384 pKa = 10.36LIQDD388 pKa = 3.44AVTTQWSSQSILLPALSTSDD408 pKa = 2.71IYY410 pKa = 11.05EE411 pKa = 4.11YY412 pKa = 11.45YY413 pKa = 11.19AFTTTLKK420 pKa = 9.66VTDD423 pKa = 4.97DD424 pKa = 3.75NNLPIGGQAVQITATSPCSLYY445 pKa = 10.02MDD447 pKa = 3.84NQYY450 pKa = 8.53VTLLPDD456 pKa = 3.22VPLTVTSDD464 pKa = 3.36STGMITFVQEE474 pKa = 4.12TQTLGAVCYY483 pKa = 10.36NFQQDD488 pKa = 3.68DD489 pKa = 4.24NSWLNVNPMNNIVQSMSGITQGSDD513 pKa = 2.71LTAVNVTDD521 pKa = 4.35EE522 pKa = 4.53YY523 pKa = 11.26GTTTPLVPSTIPADD537 pKa = 3.65QADD540 pKa = 3.96AVAKK544 pKa = 10.62GIAQFVSTAQTLPQDD559 pKa = 3.88GSLQSTGSFAASEE572 pKa = 4.19GLVWGLSFANNSIQYY587 pKa = 10.14FEE589 pKa = 5.29GSSQYY594 pKa = 10.91AAAGIIPASDD604 pKa = 2.8IGNAIEE610 pKa = 5.38AFAGDD615 pKa = 3.26IFKK618 pKa = 10.22WLEE621 pKa = 3.74NAVDD625 pKa = 3.97EE626 pKa = 4.58VAQFVVKK633 pKa = 10.89VIDD636 pKa = 4.08GVTHH640 pKa = 6.08FFIEE644 pKa = 4.03IGDD647 pKa = 3.97AVYY650 pKa = 10.55HH651 pKa = 7.08FIMQCINDD659 pKa = 4.0VVHH662 pKa = 7.28GIQFILSKK670 pKa = 10.57IEE672 pKa = 3.88AGFEE676 pKa = 4.39KK677 pKa = 10.46LVQWVGFIFSWSDD690 pKa = 3.15IIRR693 pKa = 11.84THH695 pKa = 6.22NVLKK699 pKa = 10.95NIFAQYY705 pKa = 10.42SQYY708 pKa = 11.06CVDD711 pKa = 4.6NISSYY716 pKa = 10.96KK717 pKa = 8.69QTLLDD722 pKa = 3.57TLSTINEE729 pKa = 4.93EE730 pKa = 3.5IDD732 pKa = 2.93QWANIPAVSDD742 pKa = 4.08TIAGSNASSPSMPGKK757 pKa = 10.22DD758 pKa = 3.13SPQSHH763 pKa = 6.26WALYY767 pKa = 7.29HH768 pKa = 5.43TKK770 pKa = 10.61GNVAGASTTFDD781 pKa = 3.0ASFDD785 pKa = 3.73GDD787 pKa = 3.96ALSLIIADD795 pKa = 4.3LCTALEE801 pKa = 4.06NEE803 pKa = 4.36EE804 pKa = 4.34QNFEE808 pKa = 4.29DD809 pKa = 4.36VLAALKK815 pKa = 9.98TDD817 pKa = 3.92VIDD820 pKa = 4.69QIGTLSASEE829 pKa = 5.27LITNLLGIIANLLIDD844 pKa = 3.76TVGNIIGTVMDD855 pKa = 4.99IIAALVAGVVEE866 pKa = 4.88ALTTPLDD873 pKa = 3.61IPVISYY879 pKa = 9.95IYY881 pKa = 11.06NKK883 pKa = 9.13FTGNDD888 pKa = 3.4LTLLDD893 pKa = 4.42LTCLIVSIPVTIIYY907 pKa = 10.34KK908 pKa = 10.04LIKK911 pKa = 9.86EE912 pKa = 4.34ATPFPDD918 pKa = 5.1DD919 pKa = 4.67SFTQSLIAATDD930 pKa = 3.38YY931 pKa = 7.9TTIQNLYY938 pKa = 10.21AGASSLAVADD948 pKa = 4.64DD949 pKa = 4.69DD950 pKa = 5.11GVTPVQIITLTLAISGYY967 pKa = 9.46FGSIAMIIMTAVKK980 pKa = 10.04AAAPQSAAVCTVYY993 pKa = 11.24ALAYY997 pKa = 9.97LPYY1000 pKa = 9.39IAPNIAITKK1009 pKa = 9.62PSTQKK1014 pKa = 10.07WYY1016 pKa = 11.1VDD1018 pKa = 3.25MDD1020 pKa = 4.23EE1021 pKa = 5.13IITVISVIKK1030 pKa = 9.26TFSDD1034 pKa = 2.82ITLYY1038 pKa = 10.59KK1039 pKa = 9.84YY1040 pKa = 10.91DD1041 pKa = 4.28KK1042 pKa = 10.34NDD1044 pKa = 3.67PEE1046 pKa = 5.13ASQTLAKK1053 pKa = 8.61WAKK1056 pKa = 8.62ASPYY1060 pKa = 10.32VEE1062 pKa = 4.91LLINVIWEE1070 pKa = 3.85IPTIGFIADD1079 pKa = 3.5NQDD1082 pKa = 2.74AGTVLGFLGNTSFNVSGILSPWSDD1106 pKa = 2.98TDD1108 pKa = 3.7YY1109 pKa = 11.88VMLGIVIFIGLYY1121 pKa = 9.81GEE1123 pKa = 4.2MMLVQGMVNFPAPSSAKK1140 pKa = 10.15YY1141 pKa = 10.12LATKK1145 pKa = 9.51EE1146 pKa = 4.02AA1147 pKa = 3.95

Molecular weight: 123.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I0Q2Q1|A0A1I0Q2Q1_9BACT Uncharacterized protein OS=Chitinophaga sp. YR573 OX=1881040 GN=SAMN05428988_3166 PE=4 SV=1
MM1 pKa = 6.41NTKK4 pKa = 9.41IRR6 pKa = 11.84AFIIMLLLYY15 pKa = 9.7GLHH18 pKa = 6.08VYY20 pKa = 10.76LMNTLLSIHH29 pKa = 6.78SNMSDD34 pKa = 2.46ILAFLMMIACPFYY47 pKa = 10.97KK48 pKa = 9.84RR49 pKa = 11.84IHH51 pKa = 5.53QRR53 pKa = 11.84LVATLKK59 pKa = 10.66NRR61 pKa = 3.55

Molecular weight: 7.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6483

0

6483

2436871

29

7223

375.9

42.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.613 ± 0.033

0.826 ± 0.011

5.334 ± 0.021

5.302 ± 0.036

4.577 ± 0.021

6.936 ± 0.029

1.92 ± 0.015

7.016 ± 0.027

6.352 ± 0.029

9.389 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.337 ± 0.016

5.499 ± 0.029

4.023 ± 0.021

3.89 ± 0.021

4.007 ± 0.022

6.466 ± 0.031

6.428 ± 0.058

6.436 ± 0.028

1.297 ± 0.013

4.352 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski