Amino acid dipepetide frequency for Wisteria badnavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.669AlaAla: 4.669 ± 0.783
0.849AlaCys: 0.849 ± 0.401
2.971AlaAsp: 2.971 ± 1.029
4.669AlaGlu: 4.669 ± 2.206
3.396AlaPhe: 3.396 ± 0.898
4.669AlaGly: 4.669 ± 1.522
0.424AlaHis: 0.424 ± 1.175
4.244AlaIle: 4.244 ± 1.837
2.971AlaLys: 2.971 ± 1.029
3.82AlaLeu: 3.82 ± 2.058
1.698AlaMet: 1.698 ± 0.813
2.122AlaAsn: 2.122 ± 1.397
2.122AlaPro: 2.122 ± 1.003
6.791AlaGln: 6.791 ± 2.12
3.396AlaArg: 3.396 ± 1.042
2.122AlaSer: 2.122 ± 1.003
3.396AlaThr: 3.396 ± 2.671
5.093AlaVal: 5.093 ± 1.603
0.424AlaTrp: 0.424 ± 0.201
1.698AlaTyr: 1.698 ± 0.802
0.0AlaXaa: 0.0 ± 0.0
Cys
1.698CysAla: 1.698 ± 0.813
0.849CysCys: 0.849 ± 0.401
1.273CysAsp: 1.273 ± 0.864
0.0CysGlu: 0.0 ± 0.0
1.273CysPhe: 1.273 ± 0.903
1.273CysGly: 1.273 ± 0.602
0.424CysHis: 0.424 ± 0.201
0.424CysIle: 0.424 ± 0.201
1.698CysLys: 1.698 ± 0.802
0.424CysLeu: 0.424 ± 0.201
0.424CysMet: 0.424 ± 0.201
0.424CysAsn: 0.424 ± 0.201
2.122CysPro: 2.122 ± 0.81
0.849CysGln: 0.849 ± 0.401
0.424CysArg: 0.424 ± 0.201
2.547CysSer: 2.547 ± 0.855
0.0CysThr: 0.0 ± 0.0
0.849CysVal: 0.849 ± 1.249
0.0CysTrp: 0.0 ± 0.0
0.849CysTyr: 0.849 ± 0.401
0.0CysXaa: 0.0 ± 0.0
Asp
0.849AspAla: 0.849 ± 0.401
1.698AspCys: 1.698 ± 1.91
2.971AspAsp: 2.971 ± 1.029
3.396AspGlu: 3.396 ± 1.604
2.547AspPhe: 2.547 ± 0.999
2.122AspGly: 2.122 ± 0.81
2.547AspHis: 2.547 ± 0.999
3.396AspIle: 3.396 ± 1.096
2.547AspLys: 2.547 ± 0.754
5.093AspLeu: 5.093 ± 1.564
1.273AspMet: 1.273 ± 0.864
2.547AspAsn: 2.547 ± 1.258
2.547AspPro: 2.547 ± 1.347
2.547AspGln: 2.547 ± 1.203
2.122AspArg: 2.122 ± 1.925
2.122AspSer: 2.122 ± 1.397
3.82AspThr: 3.82 ± 2.128
1.273AspVal: 1.273 ± 1.14
1.273AspTrp: 1.273 ± 0.602
3.82AspTyr: 3.82 ± 1.023
0.0AspXaa: 0.0 ± 0.0
Glu
5.518GluAla: 5.518 ± 1.825
0.849GluCys: 0.849 ± 0.401
9.338GluAsp: 9.338 ± 2.315
12.733GluGlu: 12.733 ± 2.745
0.424GluPhe: 0.424 ± 0.201
7.64GluGly: 7.64 ± 1.638
1.698GluHis: 1.698 ± 0.813
3.396GluIle: 3.396 ± 1.604
4.669GluLys: 4.669 ± 3.245
5.093GluLeu: 5.093 ± 2.428
1.698GluMet: 1.698 ± 0.802
1.698GluAsn: 1.698 ± 0.802
2.547GluPro: 2.547 ± 1.806
2.547GluGln: 2.547 ± 0.855
2.971GluArg: 2.971 ± 2.794
4.244GluSer: 4.244 ± 1.169
7.64GluThr: 7.64 ± 1.695
5.093GluVal: 5.093 ± 0.842
1.698GluTrp: 1.698 ± 0.808
1.698GluTyr: 1.698 ± 1.549
0.0GluXaa: 0.0 ± 0.0
Phe
2.122PheAla: 2.122 ± 1.009
1.273PheCys: 1.273 ± 0.602
1.273PheAsp: 1.273 ± 0.602
1.273PheGlu: 1.273 ± 0.602
1.273PhePhe: 1.273 ± 0.602
2.122PheGly: 2.122 ± 1.003
2.122PheHis: 2.122 ± 1.925
2.971PheIle: 2.971 ± 0.942
2.971PheLys: 2.971 ± 1.029
6.367PheLeu: 6.367 ± 1.466
0.424PheMet: 0.424 ± 0.799
0.424PheAsn: 0.424 ± 0.201
0.849PhePro: 0.849 ± 0.401
2.971PheGln: 2.971 ± 1.197
2.547PheArg: 2.547 ± 1.728
1.698PheSer: 1.698 ± 0.808
1.273PheThr: 1.273 ± 0.602
1.273PheVal: 1.273 ± 1.14
0.0PheTrp: 0.0 ± 0.0
0.849PheTyr: 0.849 ± 0.401
0.0PheXaa: 0.0 ± 0.0
Gly
4.244GlyAla: 4.244 ± 2.005
1.273GlyCys: 1.273 ± 0.602
4.244GlyAsp: 4.244 ± 1.313
5.518GlyGlu: 5.518 ± 2.019
3.396GlyPhe: 3.396 ± 1.096
4.669GlyGly: 4.669 ± 1.445
0.0GlyHis: 0.0 ± 0.0
5.093GlyIle: 5.093 ± 1.603
4.244GlyLys: 4.244 ± 1.169
6.791GlyLeu: 6.791 ± 3.208
1.273GlyMet: 1.273 ± 0.555
2.971GlyAsn: 2.971 ± 2.762
2.971GlyPro: 2.971 ± 1.404
2.547GlyGln: 2.547 ± 1.203
1.273GlyArg: 1.273 ± 0.864
2.971GlySer: 2.971 ± 1.994
3.82GlyThr: 3.82 ± 1.61
4.244GlyVal: 4.244 ± 1.356
0.424GlyTrp: 0.424 ± 0.201
0.849GlyTyr: 0.849 ± 0.401
0.0GlyXaa: 0.0 ± 0.0
His
0.849HisAla: 0.849 ± 0.401
0.424HisCys: 0.424 ± 1.379
0.849HisAsp: 0.849 ± 1.249
1.273HisGlu: 1.273 ± 1.14
0.424HisPhe: 0.424 ± 0.201
1.273HisGly: 1.273 ± 0.602
1.273HisHis: 1.273 ± 1.857
3.396HisIle: 3.396 ± 1.06
1.273HisLys: 1.273 ± 0.864
1.273HisLeu: 1.273 ± 2.2
0.0HisMet: 0.0 ± 0.0
1.698HisAsn: 1.698 ± 2.057
0.0HisPro: 0.0 ± 0.0
1.698HisGln: 1.698 ± 0.808
1.273HisArg: 1.273 ± 0.864
0.424HisSer: 0.424 ± 1.175
0.424HisThr: 0.424 ± 1.076
1.273HisVal: 1.273 ± 0.602
0.424HisTrp: 0.424 ± 0.201
2.122HisTyr: 2.122 ± 1.925
0.0HisXaa: 0.0 ± 0.0
Ile
2.971IleAla: 2.971 ± 1.404
2.547IleCys: 2.547 ± 1.203
3.396IleAsp: 3.396 ± 1.096
4.244IleGlu: 4.244 ± 1.837
2.971IlePhe: 2.971 ± 1.138
2.971IleGly: 2.971 ± 1.404
2.122IleHis: 2.122 ± 2.172
4.669IleIle: 4.669 ± 2.206
3.82IleLys: 3.82 ± 0.814
2.971IleLeu: 2.971 ± 1.197
0.849IleMet: 0.849 ± 0.955
6.791IleAsn: 6.791 ± 1.377
6.791IlePro: 6.791 ± 1.623
3.82IleGln: 3.82 ± 2.058
2.971IleArg: 2.971 ± 0.805
2.971IleSer: 2.971 ± 1.016
4.244IleThr: 4.244 ± 2.018
1.273IleVal: 1.273 ± 0.602
0.0IleTrp: 0.0 ± 0.0
1.698IleTyr: 1.698 ± 0.802
0.0IleXaa: 0.0 ± 0.0
Lys
5.518LysAla: 5.518 ± 1.449
0.424LysCys: 0.424 ± 0.201
4.244LysAsp: 4.244 ± 1.169
7.216LysGlu: 7.216 ± 2.203
3.396LysPhe: 3.396 ± 0.899
4.244LysGly: 4.244 ± 1.313
1.698LysHis: 1.698 ± 0.802
2.122LysIle: 2.122 ± 1.003
7.64LysLys: 7.64 ± 1.695
5.093LysLeu: 5.093 ± 1.695
1.698LysMet: 1.698 ± 0.802
2.971LysAsn: 2.971 ± 1.404
2.547LysPro: 2.547 ± 1.347
3.82LysGln: 3.82 ± 3.419
3.396LysArg: 3.396 ± 2.115
5.518LysSer: 5.518 ± 0.569
2.122LysThr: 2.122 ± 3.871
3.396LysVal: 3.396 ± 2.115
0.424LysTrp: 0.424 ± 0.201
0.849LysTyr: 0.849 ± 0.955
0.0LysXaa: 0.0 ± 0.0
Leu
5.093LeuAla: 5.093 ± 2.406
0.849LeuCys: 0.849 ± 0.401
2.971LeuAsp: 2.971 ± 2.952
7.64LeuGlu: 7.64 ± 7.954
0.849LeuPhe: 0.849 ± 1.029
6.791LeuGly: 6.791 ± 1.266
1.698LeuHis: 1.698 ± 0.802
2.971LeuIle: 2.971 ± 1.029
5.518LeuLys: 5.518 ± 1.866
5.942LeuLeu: 5.942 ± 2.393
1.273LeuMet: 1.273 ± 0.864
4.244LeuAsn: 4.244 ± 1.169
6.367LeuPro: 6.367 ± 2.173
3.396LeuGln: 3.396 ± 1.06
4.669LeuArg: 4.669 ± 2.206
5.518LeuSer: 5.518 ± 1.764
6.791LeuThr: 6.791 ± 3.294
6.791LeuVal: 6.791 ± 0.056
0.0LeuTrp: 0.0 ± 0.0
2.547LeuTyr: 2.547 ± 0.855
0.0LeuXaa: 0.0 ± 0.0
Met
2.122MetAla: 2.122 ± 0.81
0.424MetCys: 0.424 ± 0.201
1.273MetAsp: 1.273 ± 0.864
4.669MetGlu: 4.669 ± 1.654
0.0MetPhe: 0.0 ± 0.0
0.424MetGly: 0.424 ± 0.201
0.0MetHis: 0.0 ± 0.0
0.424MetIle: 0.424 ± 0.201
0.849MetLys: 0.849 ± 0.401
2.122MetLeu: 2.122 ± 0.81
0.849MetMet: 0.849 ± 0.401
0.424MetAsn: 0.424 ± 0.201
0.424MetPro: 0.424 ± 0.201
1.698MetGln: 1.698 ± 0.802
0.424MetArg: 0.424 ± 0.201
3.396MetSer: 3.396 ± 1.57
0.0MetThr: 0.0 ± 0.0
1.698MetVal: 1.698 ± 0.802
0.424MetTrp: 0.424 ± 0.201
0.424MetTyr: 0.424 ± 0.201
0.0MetXaa: 0.0 ± 0.0
Asn
2.547AsnAla: 2.547 ± 0.999
0.849AsnCys: 0.849 ± 0.401
0.424AsnAsp: 0.424 ± 0.201
2.122AsnGlu: 2.122 ± 1.81
2.547AsnPhe: 2.547 ± 1.347
0.849AsnGly: 0.849 ± 0.401
0.424AsnHis: 0.424 ± 1.175
3.396AsnIle: 3.396 ± 1.042
1.698AsnLys: 1.698 ± 1.058
5.093AsnLeu: 5.093 ± 1.029
0.424AsnMet: 0.424 ± 0.201
2.122AsnAsn: 2.122 ± 1.009
2.122AsnPro: 2.122 ± 0.755
2.547AsnGln: 2.547 ± 2.45
3.396AsnArg: 3.396 ± 1.042
5.518AsnSer: 5.518 ± 2.607
2.971AsnThr: 2.971 ± 0.805
2.547AsnVal: 2.547 ± 1.203
1.698AsnTrp: 1.698 ± 0.802
2.122AsnTyr: 2.122 ± 0.81
0.0AsnXaa: 0.0 ± 0.0
Pro
2.971ProAla: 2.971 ± 0.942
0.424ProCys: 0.424 ± 1.175
2.547ProAsp: 2.547 ± 1.347
3.82ProGlu: 3.82 ± 1.37
1.698ProPhe: 1.698 ± 1.058
2.971ProGly: 2.971 ± 0.942
1.273ProHis: 1.273 ± 1.711
3.82ProIle: 3.82 ± 1.805
3.82ProLys: 3.82 ± 2.012
2.547ProLeu: 2.547 ± 1.203
0.424ProMet: 0.424 ± 0.201
2.122ProAsn: 2.122 ± 1.003
4.244ProPro: 4.244 ± 1.511
2.547ProGln: 2.547 ± 1.203
2.122ProArg: 2.122 ± 0.755
3.396ProSer: 3.396 ± 0.898
3.396ProThr: 3.396 ± 1.616
1.273ProVal: 1.273 ± 0.602
1.273ProTrp: 1.273 ± 0.602
2.547ProTyr: 2.547 ± 0.999
0.0ProXaa: 0.0 ± 0.0
Gln
4.244GlnAla: 4.244 ± 0.955
0.424GlnCys: 0.424 ± 0.201
2.122GlnAsp: 2.122 ± 1.003
2.122GlnGlu: 2.122 ± 1.003
1.273GlnPhe: 1.273 ± 0.602
5.518GlnGly: 5.518 ± 0.941
0.849GlnHis: 0.849 ± 0.401
4.669GlnIle: 4.669 ± 3.339
2.971GlnLys: 2.971 ± 1.016
5.942GlnLeu: 5.942 ± 2.556
0.849GlnMet: 0.849 ± 0.401
2.122GlnAsn: 2.122 ± 1.009
2.971GlnPro: 2.971 ± 0.805
3.82GlnGln: 3.82 ± 1.805
5.942GlnArg: 5.942 ± 1.237
2.122GlnSer: 2.122 ± 0.755
2.971GlnThr: 2.971 ± 2.296
3.82GlnVal: 3.82 ± 1.805
0.424GlnTrp: 0.424 ± 0.201
0.849GlnTyr: 0.849 ± 0.401
0.0GlnXaa: 0.0 ± 0.0
Arg
2.971ArgAla: 2.971 ± 0.942
0.424ArgCys: 0.424 ± 0.201
2.547ArgAsp: 2.547 ± 2.865
2.971ArgGlu: 2.971 ± 0.805
1.698ArgPhe: 1.698 ± 0.808
2.971ArgGly: 2.971 ± 1.666
1.698ArgHis: 1.698 ± 1.549
5.518ArgIle: 5.518 ± 1.672
3.396ArgLys: 3.396 ± 1.042
5.093ArgLeu: 5.093 ± 2.782
2.547ArgMet: 2.547 ± 0.878
3.396ArgAsn: 3.396 ± 1.604
2.547ArgPro: 2.547 ± 1.203
2.122ArgGln: 2.122 ± 1.397
4.244ArgArg: 4.244 ± 1.356
1.698ArgSer: 1.698 ± 0.802
2.971ArgThr: 2.971 ± 0.805
4.669ArgVal: 4.669 ± 2.206
1.698ArgTrp: 1.698 ± 0.802
1.273ArgTyr: 1.273 ± 0.602
0.0ArgXaa: 0.0 ± 0.0
Ser
2.971SerAla: 2.971 ± 1.029
1.698SerCys: 1.698 ± 0.813
1.273SerAsp: 1.273 ± 0.602
5.093SerGlu: 5.093 ± 1.852
2.547SerPhe: 2.547 ± 0.855
5.518SerGly: 5.518 ± 1.764
0.0SerHis: 0.0 ± 0.0
4.669SerIle: 4.669 ± 2.199
3.82SerLys: 3.82 ± 1.193
4.244SerLeu: 4.244 ± 0.955
2.547SerMet: 2.547 ± 0.774
2.122SerAsn: 2.122 ± 0.755
1.273SerPro: 1.273 ± 0.602
6.367SerGln: 6.367 ± 1.694
4.244SerArg: 4.244 ± 1.851
5.942SerSer: 5.942 ± 4.816
4.244SerThr: 4.244 ± 0.875
2.547SerVal: 2.547 ± 0.999
2.122SerTrp: 2.122 ± 1.009
0.849SerTyr: 0.849 ± 0.401
0.0SerXaa: 0.0 ± 0.0
Thr
5.942ThrAla: 5.942 ± 2.705
0.424ThrCys: 0.424 ± 0.201
1.273ThrAsp: 1.273 ± 0.602
5.518ThrGlu: 5.518 ± 1.788
2.547ThrPhe: 2.547 ± 0.855
3.396ThrGly: 3.396 ± 1.626
2.122ThrHis: 2.122 ± 1.009
2.971ThrIle: 2.971 ± 1.138
2.971ThrLys: 2.971 ± 3.907
6.367ThrLeu: 6.367 ± 5.087
0.424ThrMet: 0.424 ± 0.201
1.273ThrAsn: 1.273 ± 0.903
1.698ThrPro: 1.698 ± 1.68
1.698ThrGln: 1.698 ± 1.549
5.093ThrArg: 5.093 ± 1.499
6.791ThrSer: 6.791 ± 2.125
4.244ThrThr: 4.244 ± 3.875
4.244ThrVal: 4.244 ± 1.356
1.273ThrTrp: 1.273 ± 0.602
0.424ThrTyr: 0.424 ± 0.201
0.0ThrXaa: 0.0 ± 0.0
Val
2.971ValAla: 2.971 ± 1.404
0.424ValCys: 0.424 ± 0.201
2.122ValAsp: 2.122 ± 0.81
4.244ValGlu: 4.244 ± 2.005
2.122ValPhe: 2.122 ± 1.003
1.698ValGly: 1.698 ± 0.802
0.849ValHis: 0.849 ± 1.029
2.547ValIle: 2.547 ± 0.999
6.367ValLys: 6.367 ± 3.028
4.244ValLeu: 4.244 ± 1.356
2.547ValMet: 2.547 ± 1.203
2.122ValAsn: 2.122 ± 1.003
3.396ValPro: 3.396 ± 1.096
2.122ValGln: 2.122 ± 1.009
3.396ValArg: 3.396 ± 1.604
2.971ValSer: 2.971 ± 1.016
4.669ValThr: 4.669 ± 0.783
2.547ValVal: 2.547 ± 1.203
0.0ValTrp: 0.0 ± 0.0
2.971ValTyr: 2.971 ± 1.029
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.849TrpCys: 0.849 ± 0.401
0.849TrpAsp: 0.849 ± 0.401
2.122TrpGlu: 2.122 ± 1.003
0.0TrpPhe: 0.0 ± 0.0
0.424TrpGly: 0.424 ± 0.201
0.0TrpHis: 0.0 ± 0.0
1.273TrpIle: 1.273 ± 1.14
2.122TrpLys: 2.122 ± 1.003
1.698TrpLeu: 1.698 ± 0.802
0.424TrpMet: 0.424 ± 0.201
0.849TrpAsn: 0.849 ± 1.029
0.424TrpPro: 0.424 ± 0.201
0.849TrpGln: 0.849 ± 0.401
0.849TrpArg: 0.849 ± 0.401
0.0TrpSer: 0.0 ± 0.0
0.849TrpThr: 0.849 ± 0.401
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.273TyrAla: 1.273 ± 0.602
0.849TyrCys: 0.849 ± 0.955
2.547TyrAsp: 2.547 ± 0.754
2.547TyrGlu: 2.547 ± 0.999
2.122TyrPhe: 2.122 ± 0.81
1.273TyrGly: 1.273 ± 0.602
0.424TyrHis: 0.424 ± 0.201
2.122TyrIle: 2.122 ± 1.003
2.971TyrLys: 2.971 ± 1.197
1.698TyrLeu: 1.698 ± 0.808
0.0TyrMet: 0.0 ± 0.0
2.971TyrAsn: 2.971 ± 0.805
1.273TyrPro: 1.273 ± 0.602
1.273TyrGln: 1.273 ± 0.864
1.698TyrArg: 1.698 ± 0.813
2.122TyrSer: 2.122 ± 1.003
0.849TyrThr: 0.849 ± 0.401
0.424TyrVal: 0.424 ± 0.201
0.0TyrTrp: 0.0 ± 0.0
1.698TyrTyr: 1.698 ± 1.549
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (2357 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski