Armadillidium nasatum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Peracarida; Isopoda; Oniscidea; Crinocheta; Armadillidiidae; Armadillidium

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14427 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5N5SRP6|A0A5N5SRP6_9CRUS Galectin (Fragment) OS=Armadillidium nasatum OX=96803 GN=LGALS7 PE=4 SV=1
MM1 pKa = 7.85LLRR4 pKa = 11.84NSSVTYY10 pKa = 10.4CSEE13 pKa = 3.68EE14 pKa = 4.3GNWNDD19 pKa = 4.19EE20 pKa = 4.01GSKK23 pKa = 10.93DD24 pKa = 3.65STGVLQVIDD33 pKa = 4.23WDD35 pKa = 5.41PILLWYY41 pKa = 10.06LPNLCCIKK49 pKa = 10.4DD50 pKa = 3.44IEE52 pKa = 4.32IMVRR56 pKa = 11.84GVGLNSISSIGCGSGLLEE74 pKa = 4.63WIITSLTDD82 pKa = 3.46ADD84 pKa = 4.17ADD86 pKa = 3.82ADD88 pKa = 3.94ADD90 pKa = 4.05ADD92 pKa = 3.85TDD94 pKa = 3.81ADD96 pKa = 3.78ADD98 pKa = 3.77ADD100 pKa = 3.97ADD102 pKa = 3.94AEE104 pKa = 4.73AIPSIPADD112 pKa = 3.39HH113 pKa = 7.13ALLFCYY119 pKa = 10.4FNDD122 pKa = 2.92IVAFRR127 pKa = 11.84SYY129 pKa = 11.01LNKK132 pKa = 10.64YY133 pKa = 10.15KK134 pKa = 10.5GDD136 pKa = 3.78CLIIIGSVDD145 pKa = 3.1GNTNDD150 pKa = 3.39EE151 pKa = 4.33SQSFGVEE158 pKa = 3.56RR159 pKa = 11.84VTT161 pKa = 4.94

Molecular weight: 17.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5N5SWM6|A0A5N5SWM6_9CRUS Neural cell adhesion molecule 2 (Fragment) OS=Armadillidium nasatum OX=96803 GN=Ncam2 PE=4 SV=1
GG1 pKa = 6.66SAPVKK6 pKa = 10.77HH7 pKa = 6.13NVSTLNGSTSRR18 pKa = 11.84LGASTSRR25 pKa = 11.84SRR27 pKa = 11.84SLSRR31 pKa = 11.84LNTSGPSGIPNTKK44 pKa = 9.67RR45 pKa = 11.84SRR47 pKa = 11.84TSSTTSLSSNHH58 pKa = 6.13SASKK62 pKa = 10.6IPILRR67 pKa = 3.9

Molecular weight: 6.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14427

0

14427

5254146

9

8334

364.2

41.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.966 ± 0.019

2.036 ± 0.016

5.314 ± 0.019

7.223 ± 0.031

4.334 ± 0.016

5.389 ± 0.03

2.425 ± 0.012

6.165 ± 0.018

7.293 ± 0.032

9.14 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.154 ± 0.01

5.448 ± 0.021

4.88 ± 0.028

3.727 ± 0.018

4.753 ± 0.017

9.125 ± 0.04

5.449 ± 0.022

5.893 ± 0.017

1.017 ± 0.008

3.272 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski