Trichoderma longibrachiatum ATCC 18648

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma; Trichoderma longibrachiatum

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10930 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T4C3Y8|A0A2T4C3Y8_TRILO Branched-chain-amino-acid aminotransferase OS=Trichoderma longibrachiatum ATCC 18648 OX=983965 GN=M440DRAFT_1438976 PE=3 SV=1
MM1 pKa = 7.24QFLTAAFALLGLALTASAADD21 pKa = 3.77EE22 pKa = 4.1QLCFPVPGQINNVPQSITDD41 pKa = 3.76LDD43 pKa = 4.06VQIKK47 pKa = 9.06IHH49 pKa = 6.41WATKK53 pKa = 9.48LCAQIDD59 pKa = 4.58YY60 pKa = 9.06STVDD64 pKa = 3.49AQSVTTDD71 pKa = 2.95VADD74 pKa = 4.38GVDD77 pKa = 3.1ATEE80 pKa = 3.99NGKK83 pKa = 8.0TYY85 pKa = 10.82GLNLVTVAVPNEE97 pKa = 4.15EE98 pKa = 4.0KK99 pKa = 10.97CIDD102 pKa = 3.58NAAATLGADD111 pKa = 3.54VCPSGGAFINLDD123 pKa = 3.63NNEE126 pKa = 4.47EE127 pKa = 3.99EE128 pKa = 4.32WFSIVALDD136 pKa = 3.48

Molecular weight: 14.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T4C8X6|A0A2T4C8X6_TRILO Kinase-like protein OS=Trichoderma longibrachiatum ATCC 18648 OX=983965 GN=M440DRAFT_1328958 PE=4 SV=1
LL1 pKa = 6.2THH3 pKa = 5.54THH5 pKa = 5.8SRR7 pKa = 11.84SHH9 pKa = 6.36TPAQPGIQSQYY20 pKa = 9.84LFSGFVFNARR30 pKa = 11.84LPSSSFLSNSFSLLFFFFFFLSQASSSSSPQFVLILVLVLVRR72 pKa = 11.84PSVRR76 pKa = 11.84LSSLFPAPLANRR88 pKa = 11.84PSTVRR93 pKa = 11.84LSQPPSIRR101 pKa = 11.84VSPRR105 pKa = 11.84PRR107 pKa = 11.84QLINRR112 pKa = 11.84RR113 pKa = 11.84KK114 pKa = 9.87QKK116 pKa = 9.85TII118 pKa = 3.2

Molecular weight: 13.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10929

1

10930

4672678

49

23089

427.5

47.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.159 ± 0.022

1.347 ± 0.011

5.723 ± 0.017

6.094 ± 0.026

3.655 ± 0.015

6.864 ± 0.025

2.436 ± 0.012

4.635 ± 0.016

4.731 ± 0.024

9.008 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.217 ± 0.01

3.383 ± 0.012

6.14 ± 0.023

4.044 ± 0.016

6.439 ± 0.024

8.239 ± 0.026

5.655 ± 0.016

6.098 ± 0.02

1.476 ± 0.009

2.64 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski