Sulfurovum sp. bin170

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Sulfurovaceae; Sulfurovum; unclassified Sulfurovum

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2107 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M0KY29|A0A6M0KY29_9PROT WG repeat-containing protein OS=Sulfurovum sp. bin170 OX=2695268 GN=GSY74_03800 PE=4 SV=1
MM1 pKa = 7.13KK2 pKa = 10.37QILTASIISSMIIFSGCGSTEE23 pKa = 3.76GDD25 pKa = 3.93DD26 pKa = 3.91NLGVLDD32 pKa = 4.75DD33 pKa = 4.84DD34 pKa = 4.67KK35 pKa = 11.73PRR37 pKa = 11.84ITLTANPDD45 pKa = 3.38TGSTDD50 pKa = 2.8IEE52 pKa = 4.39LRR54 pKa = 11.84LGDD57 pKa = 3.94TQIPEE62 pKa = 3.92YY63 pKa = 10.91GYY65 pKa = 10.07IAEE68 pKa = 4.74DD69 pKa = 3.76VVDD72 pKa = 4.72GDD74 pKa = 4.89LSVDD78 pKa = 3.53VQRR81 pKa = 11.84TNDD84 pKa = 3.04IDD86 pKa = 3.73LTKK89 pKa = 10.77VGTYY93 pKa = 9.08TITYY97 pKa = 9.22FVEE100 pKa = 4.42DD101 pKa = 3.69TDD103 pKa = 5.44GYY105 pKa = 9.47TDD107 pKa = 3.26TKK109 pKa = 10.01TRR111 pKa = 11.84TVTIVASNDD120 pKa = 3.3DD121 pKa = 4.28YY122 pKa = 12.23SNGDD126 pKa = 3.48YY127 pKa = 11.46SNDD130 pKa = 3.56EE131 pKa = 4.19YY132 pKa = 11.73SDD134 pKa = 4.23DD135 pKa = 4.2LSTYY139 pKa = 10.35NPNAEE144 pKa = 4.09GNIDD148 pKa = 3.77LGEE151 pKa = 4.21QIGSSQGADD160 pKa = 3.18YY161 pKa = 10.83GAGIDD166 pKa = 5.71GFTSWYY172 pKa = 10.63YY173 pKa = 10.38DD174 pKa = 3.22VCNQNFNASLYY185 pKa = 9.55NAGTGSYY192 pKa = 10.02NGTITCSNNLNSIDD206 pKa = 4.08LTPVSIFTTINGLDD220 pKa = 3.64LSNNNLTYY228 pKa = 10.2IDD230 pKa = 4.36FSVLGLNEE238 pKa = 4.14STNNTKK244 pKa = 9.81ILKK247 pKa = 10.4SLDD250 pKa = 3.31LRR252 pKa = 11.84TNSLNTQNFDD262 pKa = 3.52LFRR265 pKa = 11.84PLHH268 pKa = 5.0YY269 pKa = 10.81LKK271 pKa = 10.73DD272 pKa = 3.4IDD274 pKa = 4.95KK275 pKa = 11.13LYY277 pKa = 10.44IANNNFNYY285 pKa = 10.06TCDD288 pKa = 3.73DD289 pKa = 4.1LYY291 pKa = 11.57KK292 pKa = 10.86LRR294 pKa = 11.84TDD296 pKa = 4.45KK297 pKa = 11.2EE298 pKa = 4.25LFNNGSLDD306 pKa = 3.2IDD308 pKa = 3.57RR309 pKa = 11.84EE310 pKa = 4.15RR311 pKa = 11.84EE312 pKa = 4.06QNCPSLQNKK321 pKa = 8.44

Molecular weight: 35.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M0KWF8|A0A6M0KWF8_9PROT tRNA threonylcarbamoyladenosine dehydratase OS=Sulfurovum sp. bin170 OX=2695268 GN=GSY74_00490 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.6RR3 pKa = 11.84TFQPHH8 pKa = 4.68NTPKK12 pKa = 10.51KK13 pKa = 7.61RR14 pKa = 11.84THH16 pKa = 6.28GFRR19 pKa = 11.84TRR21 pKa = 11.84MKK23 pKa = 8.87TKK25 pKa = 10.11NGRR28 pKa = 11.84KK29 pKa = 9.33VISARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2107

0

2107

644486

30

2107

305.9

34.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.069 ± 0.056

0.814 ± 0.017

6.063 ± 0.049

7.328 ± 0.055

4.718 ± 0.047

6.134 ± 0.054

1.8 ± 0.021

8.702 ± 0.052

8.215 ± 0.066

9.424 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.617 ± 0.028

5.067 ± 0.041

2.999 ± 0.031

2.864 ± 0.029

4.004 ± 0.038

7.07 ± 0.049

5.264 ± 0.053

6.008 ± 0.042

0.817 ± 0.02

4.024 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski