Croton yellow vein mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8B8N5|Q8B8N5_9GEMI Transcriptional activator protein OS=Croton yellow vein mosaic virus OX=207697 GN=AC2 PE=3 SV=1
MM1 pKa = 7.45PRR3 pKa = 11.84INSFCVNAKK12 pKa = 10.44NIFLTYY18 pKa = 8.78PKK20 pKa = 10.44CPIPKK25 pKa = 9.32EE26 pKa = 3.88QMLEE30 pKa = 3.64ILKK33 pKa = 10.73NISCPSNRR41 pKa = 11.84LFIRR45 pKa = 11.84VAQEE49 pKa = 3.49KK50 pKa = 9.43HH51 pKa = 5.42QDD53 pKa = 3.28GSMHH57 pKa = 5.64IHH59 pKa = 7.06ALIQFKK65 pKa = 10.72GKK67 pKa = 10.47SKK69 pKa = 10.22FRR71 pKa = 11.84NPRR74 pKa = 11.84HH75 pKa = 6.17FDD77 pKa = 3.17VTHH80 pKa = 7.04PNSSTQFHH88 pKa = 7.29PNFQGAKK95 pKa = 9.08SSSDD99 pKa = 3.06VKK101 pKa = 11.23SYY103 pKa = 10.83IEE105 pKa = 4.63KK106 pKa = 10.79DD107 pKa = 2.7SDD109 pKa = 4.05YY110 pKa = 11.01IDD112 pKa = 3.23WGEE115 pKa = 3.76FQIDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQTANDD132 pKa = 3.91AAAEE136 pKa = 3.94ALNAGSTEE144 pKa = 3.66AALAIIRR151 pKa = 11.84EE152 pKa = 4.23KK153 pKa = 10.87LPKK156 pKa = 10.46DD157 pKa = 4.77FIFQYY162 pKa = 11.21HH163 pKa = 5.5NLKK166 pKa = 10.79CNLDD170 pKa = 4.15RR171 pKa = 11.84IFTPPMEE178 pKa = 4.56VYY180 pKa = 10.67VSPFSSSSFDD190 pKa = 3.41QVPEE194 pKa = 3.98EE195 pKa = 4.13LEE197 pKa = 3.58EE198 pKa = 3.9WAAEE202 pKa = 4.15NVVSAAARR210 pKa = 11.84PIRR213 pKa = 11.84PISIVIEE220 pKa = 4.23GDD222 pKa = 3.2SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.15VYY251 pKa = 11.07SNDD254 pKa = 2.25AWYY257 pKa = 10.92NVIDD261 pKa = 5.2DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.76EE273 pKa = 4.49FMGAQKK279 pKa = 10.58DD280 pKa = 3.71WQSNTKK286 pKa = 9.54YY287 pKa = 10.57GKK289 pKa = 9.12PVQIKK294 pKa = 10.41GGIPTIFLCNPGPDD308 pKa = 3.27SSYY311 pKa = 11.58KK312 pKa = 10.6EE313 pKa = 3.96FLDD316 pKa = 3.79EE317 pKa = 4.63EE318 pKa = 4.37KK319 pKa = 11.05NAALKK324 pKa = 10.45NWALKK329 pKa = 10.17NATFITLEE337 pKa = 4.26GPLYY341 pKa = 10.84SGSNQSAAQDD351 pKa = 3.81SQEE354 pKa = 3.99GDD356 pKa = 3.33QASTSS361 pKa = 3.49

Molecular weight: 40.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8B8N8|Q8B8N8_9GEMI AC5 protein OS=Croton yellow vein mosaic virus OX=207697 GN=AC5 PE=4 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.3VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.07SPYY27 pKa = 9.85VNRR30 pKa = 11.84AAAPIVRR37 pKa = 11.84VTKK40 pKa = 10.71AKK42 pKa = 10.29AWANRR47 pKa = 11.84PMYY50 pKa = 9.8RR51 pKa = 11.84KK52 pKa = 8.75PRR54 pKa = 11.84MYY56 pKa = 10.82RR57 pKa = 11.84MYY59 pKa = 10.57RR60 pKa = 11.84SPDD63 pKa = 3.29VPKK66 pKa = 10.81GCEE69 pKa = 4.39GPCKK73 pKa = 10.37VQSFDD78 pKa = 3.26AKK80 pKa = 11.06NDD82 pKa = 3.27IGHH85 pKa = 6.11MGKK88 pKa = 10.22VICLSDD94 pKa = 3.33VTRR97 pKa = 11.84GIGLTHH103 pKa = 6.67RR104 pKa = 11.84VGKK107 pKa = 9.78RR108 pKa = 11.84FCVKK112 pKa = 10.05SLYY115 pKa = 10.31FVGKK119 pKa = 9.14IWMDD123 pKa = 3.43EE124 pKa = 4.06NIKK127 pKa = 9.32TKK129 pKa = 10.61NHH131 pKa = 6.02TNTVMFWIVRR141 pKa = 11.84DD142 pKa = 3.87RR143 pKa = 11.84RR144 pKa = 11.84PSGTPNDD151 pKa = 3.78FQQVFNVYY159 pKa = 10.67DD160 pKa = 4.09NEE162 pKa = 4.37PSTATVKK169 pKa = 10.59NDD171 pKa = 3.0QRR173 pKa = 11.84DD174 pKa = 3.36RR175 pKa = 11.84FQVLRR180 pKa = 11.84RR181 pKa = 11.84FQATVTGGQYY191 pKa = 10.18AAKK194 pKa = 8.87EE195 pKa = 3.58QAIIRR200 pKa = 11.84KK201 pKa = 8.88FYY203 pKa = 10.48RR204 pKa = 11.84VNNYY208 pKa = 7.79VVYY211 pKa = 10.32NHH213 pKa = 6.0QEE215 pKa = 3.43AGKK218 pKa = 10.41YY219 pKa = 8.39EE220 pKa = 4.09NHH222 pKa = 6.52TEE224 pKa = 3.99NALLLYY230 pKa = 7.29MACTHH235 pKa = 7.07ASNPVYY241 pKa = 9.99ATLKK245 pKa = 8.67VRR247 pKa = 11.84SYY249 pKa = 10.98FYY251 pKa = 11.25DD252 pKa = 3.13SVTNN256 pKa = 3.98

Molecular weight: 29.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1195

85

361

170.7

19.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.941 ± 0.859

2.259 ± 0.479

4.937 ± 0.473

4.268 ± 0.599

4.351 ± 0.498

4.937 ± 0.426

4.017 ± 0.754

5.941 ± 0.534

5.607 ± 0.835

6.276 ± 0.808

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.51 ± 0.652

5.774 ± 0.622

6.36 ± 0.71

4.77 ± 0.501

6.444 ± 0.897

8.368 ± 1.64

5.607 ± 0.593

6.527 ± 0.972

1.674 ± 0.381

3.431 ± 0.689
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski