Cestrum yellow leaf curling virus (CmYLCV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Soymovirus

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q7TD13|MVP_CYLCV Putative movement protein OS=Cestrum yellow leaf curling virus OX=175814 GN=ORF I PE=3 SV=1
MM1 pKa = 6.71SQEE4 pKa = 4.25RR5 pKa = 11.84VDD7 pKa = 3.7KK8 pKa = 10.8LRR10 pKa = 11.84KK11 pKa = 9.51LRR13 pKa = 11.84IEE15 pKa = 4.01FEE17 pKa = 4.48GIIQRR22 pKa = 11.84MEE24 pKa = 3.75VAKK27 pKa = 10.84NLLRR31 pKa = 11.84EE32 pKa = 4.35LEE34 pKa = 4.19EE35 pKa = 3.88TTDD38 pKa = 3.25RR39 pKa = 11.84VRR41 pKa = 11.84VDD43 pKa = 3.51RR44 pKa = 11.84LQMEE48 pKa = 4.5VGFLRR53 pKa = 11.84DD54 pKa = 3.5YY55 pKa = 11.94ADD57 pKa = 3.63INCMIEE63 pKa = 3.8KK64 pKa = 10.47DD65 pKa = 3.75RR66 pKa = 11.84IKK68 pKa = 10.28EE69 pKa = 3.95QSSSSSATRR78 pKa = 11.84TTQEE82 pKa = 4.2PSLHH86 pKa = 6.6LPDD89 pKa = 3.98

Molecular weight: 10.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q7TD09|CAPSD_CYLCV Capsid protein OS=Cestrum yellow leaf curling virus OX=175814 GN=ORF IV PE=3 SV=1
MM1 pKa = 7.51KK2 pKa = 10.69SKK4 pKa = 10.84GNPNATFITVKK15 pKa = 10.51INDD18 pKa = 3.78VFINAYY24 pKa = 9.51VDD26 pKa = 3.57TGATICLADD35 pKa = 4.29PKK37 pKa = 10.8IKK39 pKa = 10.7LKK41 pKa = 8.32WVKK44 pKa = 8.92MEE46 pKa = 4.13KK47 pKa = 9.85PIKK50 pKa = 10.15ISIADD55 pKa = 3.65KK56 pKa = 9.91SVQEE60 pKa = 3.63IWHH63 pKa = 5.86RR64 pKa = 11.84AEE66 pKa = 4.6MVEE69 pKa = 3.63IWIRR73 pKa = 11.84NYY75 pKa = 10.62KK76 pKa = 9.68FVAATVCQKK85 pKa = 10.91SSGMDD90 pKa = 3.02FVIGNNFLRR99 pKa = 11.84LYY101 pKa = 10.62QPFIQGLNYY110 pKa = 9.78IKK112 pKa = 10.66LRR114 pKa = 11.84APLDD118 pKa = 3.44KK119 pKa = 10.91DD120 pKa = 3.18INQPSKK126 pKa = 10.34MIYY129 pKa = 9.97IPVTTPSKK137 pKa = 10.18ILQFAILEE145 pKa = 4.15KK146 pKa = 10.78LQDD149 pKa = 3.57ILFEE153 pKa = 4.12LHH155 pKa = 5.48VQEE158 pKa = 4.74NSKK161 pKa = 9.08TPLEE165 pKa = 4.38LKK167 pKa = 10.58VSSTLEE173 pKa = 4.09EE174 pKa = 4.27VCDD177 pKa = 4.13EE178 pKa = 4.5NPLDD182 pKa = 3.88VKK184 pKa = 10.04NTNTEE189 pKa = 3.87LVKK192 pKa = 10.44IEE194 pKa = 4.91LINPEE199 pKa = 4.19KK200 pKa = 10.46EE201 pKa = 4.11VNVPNNIPYY210 pKa = 10.29SLRR213 pKa = 11.84DD214 pKa = 3.34INEE217 pKa = 4.23FSQEE221 pKa = 3.98CADD224 pKa = 4.17LVRR227 pKa = 11.84KK228 pKa = 9.91GIIEE232 pKa = 4.08EE233 pKa = 4.41SKK235 pKa = 10.75SPHH238 pKa = 6.11SAPAFYY244 pKa = 10.93VEE246 pKa = 3.96NHH248 pKa = 5.87NEE250 pKa = 3.65IKK252 pKa = 10.1RR253 pKa = 11.84KK254 pKa = 8.33KK255 pKa = 8.87RR256 pKa = 11.84RR257 pKa = 11.84MVINYY262 pKa = 7.65KK263 pKa = 10.32ALNKK267 pKa = 9.17ATIGNAHH274 pKa = 7.33KK275 pKa = 10.52LPRR278 pKa = 11.84IDD280 pKa = 5.46SILTKK285 pKa = 10.75VKK287 pKa = 10.01GSNWFSTLDD296 pKa = 3.37AKK298 pKa = 10.57SGYY301 pKa = 7.83WQLRR305 pKa = 11.84LHH307 pKa = 6.32PQSKK311 pKa = 9.67PLTAFSCPPQKK322 pKa = 10.42HH323 pKa = 4.95YY324 pKa = 10.35QWNVLPFGLKK334 pKa = 8.94QAPGIYY340 pKa = 9.8QNFMDD345 pKa = 5.07KK346 pKa = 10.78NLEE349 pKa = 3.97GLEE352 pKa = 4.29NFCLAYY358 pKa = 9.76IDD360 pKa = 5.6DD361 pKa = 4.18ILVFTNSSRR370 pKa = 11.84EE371 pKa = 3.86EE372 pKa = 4.13HH373 pKa = 6.21LSKK376 pKa = 10.98LLVVLEE382 pKa = 4.09RR383 pKa = 11.84CKK385 pKa = 10.93EE386 pKa = 3.8KK387 pKa = 11.11GLILSKK393 pKa = 10.56KK394 pKa = 8.55KK395 pKa = 10.74AIIARR400 pKa = 11.84QTIDD404 pKa = 3.73FLGLTLQEE412 pKa = 4.1NGEE415 pKa = 4.31IKK417 pKa = 10.47LQPNVLEE424 pKa = 4.28KK425 pKa = 11.42LEE427 pKa = 4.6LFPDD431 pKa = 4.64AIEE434 pKa = 5.46DD435 pKa = 3.63RR436 pKa = 11.84KK437 pKa = 10.26QLQRR441 pKa = 11.84FLGCLNYY448 pKa = 9.98IADD451 pKa = 3.78KK452 pKa = 11.38GFLKK456 pKa = 10.68EE457 pKa = 3.8IAKK460 pKa = 7.49EE461 pKa = 4.3TKK463 pKa = 9.51NLYY466 pKa = 9.85PKK468 pKa = 10.78VSITNPWHH476 pKa = 6.39WSDD479 pKa = 5.14LDD481 pKa = 3.93SKK483 pKa = 11.07LVNQIKK489 pKa = 10.27KK490 pKa = 9.43KK491 pKa = 10.83CKK493 pKa = 9.91DD494 pKa = 3.46LSPLYY499 pKa = 10.05FPKK502 pKa = 10.71PEE504 pKa = 5.05DD505 pKa = 3.52YY506 pKa = 11.22LIIEE510 pKa = 4.65TDD512 pKa = 3.18ASGDD516 pKa = 3.26TWAGCLKK523 pKa = 10.42AAEE526 pKa = 4.35LLFPKK531 pKa = 9.43GTKK534 pKa = 9.7NKK536 pKa = 9.81VVEE539 pKa = 4.38RR540 pKa = 11.84LCKK543 pKa = 7.76YY544 pKa = 8.67TSGIFSSAEE553 pKa = 3.51QKK555 pKa = 9.33YY556 pKa = 7.05TVHH559 pKa = 6.39EE560 pKa = 4.52KK561 pKa = 9.01EE562 pKa = 4.01TLAALKK568 pKa = 9.71TMRR571 pKa = 11.84KK572 pKa = 7.89WKK574 pKa = 10.82AEE576 pKa = 3.98LLPKK580 pKa = 10.42EE581 pKa = 4.03FTLRR585 pKa = 11.84TDD587 pKa = 2.87SSYY590 pKa = 8.73VTGFARR596 pKa = 11.84HH597 pKa = 5.41NLKK600 pKa = 10.81ANYY603 pKa = 9.1NQGRR607 pKa = 11.84LVRR610 pKa = 11.84WQLEE614 pKa = 3.95FLQYY618 pKa = 9.13PARR621 pKa = 11.84VEE623 pKa = 4.16YY624 pKa = 10.46IKK626 pKa = 11.13GEE628 pKa = 4.27KK629 pKa = 10.01NSLADD634 pKa = 3.34TLTRR638 pKa = 11.84EE639 pKa = 4.59WKK641 pKa = 9.22QQQ643 pKa = 3.03

Molecular weight: 74.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2455

89

643

350.7

40.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.807 ± 0.592

1.711 ± 0.34

4.888 ± 0.463

9.328 ± 0.839

4.196 ± 0.29

4.033 ± 0.286

1.548 ± 0.3

7.617 ± 0.411

11.039 ± 0.511

8.88 ± 1.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.2 ± 0.486

5.092 ± 0.515

4.684 ± 0.343

4.644 ± 0.427

4.236 ± 0.561

7.291 ± 0.819

5.092 ± 0.174

4.562 ± 0.586

1.018 ± 0.304

3.136 ± 0.483
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski