Aquitalea magnusonii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F3K7A7|A0A0F3K7A7_9NEIS Anticodon nuclease OS=Aquitalea magnusonii OX=332411 GN=VI06_17720 PE=4 SV=1
MM1 pKa = 7.23NAVSYY6 pKa = 8.79VIRR9 pKa = 11.84DD10 pKa = 3.81AVCAGIPCPADD21 pKa = 3.11GCAGDD26 pKa = 5.7KK27 pKa = 10.89INLDD31 pKa = 3.91TNSVNDD37 pKa = 4.3PDD39 pKa = 3.88PTFLVVAKK47 pKa = 10.16SDD49 pKa = 4.18AIHH52 pKa = 7.59DD53 pKa = 3.9IFAGVAVLIDD63 pKa = 3.44VSCRR67 pKa = 11.84DD68 pKa = 3.35GG69 pKa = 3.63

Molecular weight: 7.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F3K457|A0A0F3K457_9NEIS BolA family transcriptional regulator OS=Aquitalea magnusonii OX=332411 GN=VI06_20745 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.31QPSTTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.24RR14 pKa = 11.84THH16 pKa = 5.92GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.8GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4103

0

4103

1282727

29

4629

312.6

34.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.489 ± 0.05

1.044 ± 0.013

5.201 ± 0.032

5.199 ± 0.036

3.576 ± 0.025

7.746 ± 0.034

2.429 ± 0.019

4.899 ± 0.027

3.555 ± 0.033

11.671 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.638 ± 0.021

2.981 ± 0.028

4.71 ± 0.026

5.013 ± 0.038

6.072 ± 0.033

5.955 ± 0.038

4.787 ± 0.035

7.078 ± 0.03

1.441 ± 0.018

2.515 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski