Pelistega indica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pelistega

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2121 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V8G9K0|V8G9K0_9BURK Uncharacterized protein OS=Pelistega indica OX=1414851 GN=V757_02280 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 9.87PYY4 pKa = 9.86TLEE7 pKa = 3.97PNRR10 pKa = 11.84NGEE13 pKa = 4.05GLHH16 pKa = 6.87IGIVCGRR23 pKa = 11.84FNEE26 pKa = 4.54EE27 pKa = 2.96IGYY30 pKa = 10.59AEE32 pKa = 5.31LNACLDD38 pKa = 3.84EE39 pKa = 5.66LGEE42 pKa = 4.35LGVDD46 pKa = 3.97EE47 pKa = 4.41SQIMVVTVPGALEE60 pKa = 3.92MGLALQQMALSYY72 pKa = 10.99EE73 pKa = 4.16FDD75 pKa = 3.39ALIALGAVIRR85 pKa = 11.84GEE87 pKa = 4.25TYY89 pKa = 10.16HH90 pKa = 7.23FEE92 pKa = 4.34VVSNEE97 pKa = 3.42SAAAITRR104 pKa = 11.84VGLDD108 pKa = 3.19MNIPIANGILTCEE121 pKa = 4.24TDD123 pKa = 3.08EE124 pKa = 4.33QAQEE128 pKa = 3.78RR129 pKa = 11.84AEE131 pKa = 4.36TKK133 pKa = 10.69GRR135 pKa = 11.84DD136 pKa = 3.59CAVCAVEE143 pKa = 3.94MANLVEE149 pKa = 4.24ALIPEE154 pKa = 4.33SDD156 pKa = 4.35DD157 pKa = 4.38DD158 pKa = 5.1EE159 pKa = 6.25EE160 pKa = 6.27YY161 pKa = 11.27DD162 pKa = 5.69DD163 pKa = 6.13DD164 pKa = 6.79DD165 pKa = 6.65DD166 pKa = 6.55YY167 pKa = 12.15EE168 pKa = 6.38DD169 pKa = 4.42EE170 pKa = 5.38DD171 pKa = 4.44EE172 pKa = 4.26EE173 pKa = 4.58

Molecular weight: 18.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V8G2C7|V8G2C7_9BURK GntR family transcriptional regulator OS=Pelistega indica OX=1414851 GN=V757_07555 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.39TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2121

0

2121

608854

29

2684

287.1

31.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.647 ± 0.066

0.921 ± 0.018

5.205 ± 0.045

5.971 ± 0.052

4.171 ± 0.036

6.853 ± 0.053

2.232 ± 0.028

6.881 ± 0.048

5.7 ± 0.045

10.238 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.568 ± 0.027

4.356 ± 0.037

4.196 ± 0.032

4.563 ± 0.047

4.578 ± 0.046

6.175 ± 0.042

5.562 ± 0.042

6.854 ± 0.047

1.219 ± 0.02

3.105 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski