Dictyocaulus viviparus (Bovine lungworm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Dictyocaulidae; Dictyocaulinae; Dictyocaulus

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14161 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D8XDV2|A0A0D8XDV2_DICVI Deoxyribonuclease-2 domain protein OS=Dictyocaulus viviparus OX=29172 GN=DICVIV_11222 PE=3 SV=1
MM1 pKa = 7.09YY2 pKa = 10.48LIISFLIIVLSLLTWADD19 pKa = 3.54TLFTQSAGVKK29 pKa = 9.66GILMCGDD36 pKa = 3.68RR37 pKa = 11.84PLSNTKK43 pKa = 10.1VKK45 pKa = 10.73LYY47 pKa = 10.68DD48 pKa = 4.46DD49 pKa = 5.38DD50 pKa = 5.24SGPDD54 pKa = 3.7LDD56 pKa = 5.77DD57 pKa = 4.86LLAEE61 pKa = 4.48GTTDD65 pKa = 4.26SMGQFLLYY73 pKa = 10.64GHH75 pKa = 6.64TSEE78 pKa = 5.9IMTIDD83 pKa = 3.5PKK85 pKa = 11.4LNIYY89 pKa = 9.64HH90 pKa = 7.4DD91 pKa = 4.81CDD93 pKa = 4.46DD94 pKa = 5.42SITVDD99 pKa = 4.08PLIISCC105 pKa = 5.1

Molecular weight: 11.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D8X6D0|A0A0D8X6D0_DICVI Kinesin-like protein OS=Dictyocaulus viviparus OX=29172 GN=DICVIV_13976 PE=3 SV=1
MM1 pKa = 7.27LRR3 pKa = 11.84KK4 pKa = 9.77SSLLQQRR11 pKa = 11.84NRR13 pKa = 11.84CQQQQQQKK21 pKa = 10.21KK22 pKa = 9.13NRR24 pKa = 11.84HH25 pKa = 3.68QQRR28 pKa = 11.84RR29 pKa = 11.84NRR31 pKa = 11.84NLQQQKK37 pKa = 10.46KK38 pKa = 10.01SPHH41 pKa = 4.86QQQKK45 pKa = 9.53SQNQQRR51 pKa = 11.84QRR53 pKa = 11.84KK54 pKa = 8.38NLLQQQKK61 pKa = 9.53SQNLRR66 pKa = 11.84QQKK69 pKa = 10.0KK70 pKa = 10.1SPHH73 pKa = 4.84QQQKK77 pKa = 8.52SQNRR81 pKa = 11.84QLQKK85 pKa = 10.75RR86 pKa = 11.84SLLRR90 pKa = 11.84LRR92 pKa = 11.84KK93 pKa = 9.19NRR95 pKa = 11.84SLRR98 pKa = 11.84RR99 pKa = 11.84PKK101 pKa = 10.67KK102 pKa = 10.02NLHH105 pKa = 5.83LQQKK109 pKa = 9.3

Molecular weight: 13.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14161

0

14161

4630289

27

6005

327.0

36.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.137 ± 0.02

2.26 ± 0.015

5.427 ± 0.016

6.362 ± 0.023

4.377 ± 0.015

5.291 ± 0.027

2.481 ± 0.01

6.267 ± 0.018

5.844 ± 0.023

9.194 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.641 ± 0.009

4.706 ± 0.013

4.517 ± 0.022

3.833 ± 0.015

5.956 ± 0.018

8.275 ± 0.025

5.56 ± 0.019

6.567 ± 0.016

1.106 ± 0.008

3.201 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski