Arthrobacter phage Abidatro

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Galaxyvirus; Arthrobacter virus Abidatro

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 66 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A222ZER8|A0A222ZER8_9CAUD Helix-turn-helix DNA-binding domain protein OS=Arthrobacter phage Abidatro OX=2015853 GN=36 PE=4 SV=1
MM1 pKa = 7.46NGIQNTEE8 pKa = 3.94VLTANLDD15 pKa = 3.72DD16 pKa = 5.3EE17 pKa = 4.87IGIEE21 pKa = 5.42ASGSWDD27 pKa = 4.2AIADD31 pKa = 3.73QAGNRR36 pKa = 11.84PTLAGYY42 pKa = 7.86VQHH45 pKa = 7.84DD46 pKa = 3.82DD47 pKa = 4.21RR48 pKa = 11.84IVLEE52 pKa = 4.18FTNGRR57 pKa = 11.84EE58 pKa = 3.93LTVRR62 pKa = 11.84QWQNQPAGQPFDD74 pKa = 3.91GDD76 pKa = 3.52LWDD79 pKa = 3.78VTPLGWSS86 pKa = 3.29

Molecular weight: 9.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A222ZGN3|A0A222ZGN3_9CAUD DNA methylase OS=Arthrobacter phage Abidatro OX=2015853 GN=40 PE=3 SV=1
MM1 pKa = 7.67SKK3 pKa = 10.35RR4 pKa = 11.84PQSVTLEE11 pKa = 4.21DD12 pKa = 3.61YY13 pKa = 11.42ARR15 pKa = 11.84IHH17 pKa = 6.73RR18 pKa = 11.84PDD20 pKa = 3.24LAAAEE25 pKa = 4.09AAKK28 pKa = 10.8LLGVTPRR35 pKa = 11.84TITRR39 pKa = 11.84YY40 pKa = 8.92RR41 pKa = 11.84ARR43 pKa = 11.84LGVSQPSHH51 pKa = 6.31GGAVRR56 pKa = 11.84PSPEE60 pKa = 4.0LLAEE64 pKa = 4.18IAARR68 pKa = 11.84LDD70 pKa = 3.83DD71 pKa = 4.11GWPVKK76 pKa = 9.19EE77 pKa = 4.14VCEE80 pKa = 4.21TFHH83 pKa = 6.4VCHH86 pKa = 6.03KK87 pKa = 9.26TVTRR91 pKa = 11.84HH92 pKa = 4.58FPGRR96 pKa = 11.84AWTRR100 pKa = 11.84SQIGRR105 pKa = 11.84HH106 pKa = 5.13ARR108 pKa = 11.84LVSSWW113 pKa = 2.96

Molecular weight: 12.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

66

0

66

12334

37

793

186.9

20.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.686 ± 0.475

0.73 ± 0.111

5.4 ± 0.229

6.543 ± 0.323

2.716 ± 0.171

9.875 ± 0.392

1.386 ± 0.137

3.389 ± 0.23

3.494 ± 0.266

9.129 ± 0.273

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.043 ± 0.12

2.408 ± 0.187

5.91 ± 0.266

2.7 ± 0.188

7.467 ± 0.459

5.205 ± 0.221

5.311 ± 0.362

8.7 ± 0.28

2.124 ± 0.171

1.784 ± 0.117
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski