Rhododendron virus A

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Amalgaviridae; Amalgavirus

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|E1B261|E1B261_9VIRU Putative coat protein OS=Rhododendron virus A OX=878260 PE=4 SV=1
MM1 pKa = 7.78EE2 pKa = 5.6DD3 pKa = 3.06RR4 pKa = 11.84RR5 pKa = 11.84AEE7 pKa = 4.13DD8 pKa = 4.46RR9 pKa = 11.84LDD11 pKa = 4.38DD12 pKa = 4.86DD13 pKa = 5.18LPAGGGAPPPLRR25 pKa = 11.84GLPPLPRR32 pKa = 11.84AEE34 pKa = 4.14PTDD37 pKa = 4.25AEE39 pKa = 4.13LQAAIDD45 pKa = 3.66EE46 pKa = 4.61AVAVVYY52 pKa = 9.38EE53 pKa = 4.19AGMPAGRR60 pKa = 11.84FTVQRR65 pKa = 11.84VHH67 pKa = 7.07EE68 pKa = 4.6IGLTVEE74 pKa = 4.45VFVKK78 pKa = 9.63QARR81 pKa = 11.84AVFGGKK87 pKa = 9.29NVDD90 pKa = 3.42QADD93 pKa = 4.34LIFTTGIKK101 pKa = 9.67MGVCGSLRR109 pKa = 11.84TMEE112 pKa = 4.42PAGFWEE118 pKa = 4.71VIRR121 pKa = 11.84WARR124 pKa = 11.84SNVGRR129 pKa = 11.84QALEE133 pKa = 3.77TGQKK137 pKa = 8.59VKK139 pKa = 10.69KK140 pKa = 10.82VEE142 pKa = 4.21DD143 pKa = 3.63KK144 pKa = 11.06RR145 pKa = 11.84AGTQTPNEE153 pKa = 4.1VALCQIFTMQQGIMAEE169 pKa = 4.18EE170 pKa = 4.24VKK172 pKa = 10.32EE173 pKa = 4.08ARR175 pKa = 11.84ASTQQEE181 pKa = 3.64IDD183 pKa = 3.19EE184 pKa = 4.33LTRR187 pKa = 11.84LLRR190 pKa = 11.84LKK192 pKa = 10.34RR193 pKa = 11.84AEE195 pKa = 4.0QVKK198 pKa = 10.22VLAEE202 pKa = 4.01IKK204 pKa = 10.48DD205 pKa = 3.61KK206 pKa = 11.31YY207 pKa = 10.69FPANIWEE214 pKa = 4.41EE215 pKa = 3.79PAEE218 pKa = 4.08AEE220 pKa = 4.08RR221 pKa = 11.84NARR224 pKa = 11.84CWEE227 pKa = 4.25VYY229 pKa = 10.07SAALVTAGRR238 pKa = 11.84PAPIKK243 pKa = 10.02TEE245 pKa = 3.85AAFKK249 pKa = 10.6LAIDD253 pKa = 4.29AYY255 pKa = 9.86KK256 pKa = 11.02NFVDD260 pKa = 4.13TEE262 pKa = 4.18FKK264 pKa = 10.52TRR266 pKa = 11.84FIRR269 pKa = 11.84SDD271 pKa = 3.14EE272 pKa = 4.18HH273 pKa = 7.42QVALRR278 pKa = 11.84KK279 pKa = 9.17FADD282 pKa = 3.64EE283 pKa = 5.12RR284 pKa = 11.84IHH286 pKa = 6.66FLDD289 pKa = 6.09GIGEE293 pKa = 4.17PKK295 pKa = 10.29KK296 pKa = 10.81AGTFRR301 pKa = 11.84SLLAVLGVEE310 pKa = 4.99PSAQTTTHH318 pKa = 5.1TEE320 pKa = 3.69EE321 pKa = 5.61RR322 pKa = 11.84NDD324 pKa = 3.55EE325 pKa = 4.29DD326 pKa = 5.44DD327 pKa = 4.46SGGEE331 pKa = 3.8SDD333 pKa = 3.7VARR336 pKa = 11.84GEE338 pKa = 4.16EE339 pKa = 4.32PEE341 pKa = 4.34PEE343 pKa = 4.38AGGGTSRR350 pKa = 11.84PGASGRR356 pKa = 11.84GAGRR360 pKa = 11.84GKK362 pKa = 10.52GKK364 pKa = 10.25RR365 pKa = 11.84KK366 pKa = 9.41VVPEE370 pKa = 3.84RR371 pKa = 11.84RR372 pKa = 11.84SLRR375 pKa = 11.84SSKK378 pKa = 9.29TGRR381 pKa = 11.84VTDD384 pKa = 3.53VSVQGAQGDD393 pKa = 4.3GGASRR398 pKa = 11.84PKK400 pKa = 9.9HH401 pKa = 5.49RR402 pKa = 11.84RR403 pKa = 11.84RR404 pKa = 3.44

Molecular weight:
44.22 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|E1B261|E1B261_9VIRU Putative coat protein OS=Rhododendron virus A OX=878260 PE=4 SV=1
MM1 pKa = 7.78EE2 pKa = 5.6DD3 pKa = 3.06RR4 pKa = 11.84RR5 pKa = 11.84AEE7 pKa = 4.13DD8 pKa = 4.46RR9 pKa = 11.84LDD11 pKa = 4.38DD12 pKa = 4.86DD13 pKa = 5.18LPAGGGAPPPLRR25 pKa = 11.84GLPPLPRR32 pKa = 11.84AEE34 pKa = 4.14PTDD37 pKa = 4.25AEE39 pKa = 4.13LQAAIDD45 pKa = 3.66EE46 pKa = 4.61AVAVVYY52 pKa = 9.38EE53 pKa = 4.19AGMPAGRR60 pKa = 11.84FTVQRR65 pKa = 11.84VHH67 pKa = 7.07EE68 pKa = 4.6IGLTVEE74 pKa = 4.45VFVKK78 pKa = 9.63QARR81 pKa = 11.84AVFGGKK87 pKa = 9.29NVDD90 pKa = 3.42QADD93 pKa = 4.34LIFTTGIKK101 pKa = 9.67MGVCGSLRR109 pKa = 11.84TMEE112 pKa = 4.42PAGFWEE118 pKa = 4.71VIRR121 pKa = 11.84WARR124 pKa = 11.84SNVGRR129 pKa = 11.84QALEE133 pKa = 3.77TGQKK137 pKa = 8.59VKK139 pKa = 10.69KK140 pKa = 10.82VEE142 pKa = 4.21DD143 pKa = 3.63KK144 pKa = 11.06RR145 pKa = 11.84AGTQTPNEE153 pKa = 4.1VALCQIFTMQQGIMAEE169 pKa = 4.18EE170 pKa = 4.24VKK172 pKa = 10.32EE173 pKa = 4.08ARR175 pKa = 11.84ASTQQEE181 pKa = 3.64IDD183 pKa = 3.19EE184 pKa = 4.33LTRR187 pKa = 11.84LLRR190 pKa = 11.84LKK192 pKa = 10.34RR193 pKa = 11.84AEE195 pKa = 4.0QVKK198 pKa = 10.22VLAEE202 pKa = 4.01IKK204 pKa = 10.48DD205 pKa = 3.61KK206 pKa = 11.31YY207 pKa = 10.69FPANIWEE214 pKa = 4.41EE215 pKa = 3.79PAEE218 pKa = 4.08AEE220 pKa = 4.08RR221 pKa = 11.84NARR224 pKa = 11.84CWEE227 pKa = 4.25VYY229 pKa = 10.07SAALVTAGRR238 pKa = 11.84PAPIKK243 pKa = 10.02TEE245 pKa = 3.85AAFKK249 pKa = 10.6LAIDD253 pKa = 4.29AYY255 pKa = 9.86KK256 pKa = 11.02NFVDD260 pKa = 4.13TEE262 pKa = 4.18FKK264 pKa = 10.52TRR266 pKa = 11.84FIRR269 pKa = 11.84SDD271 pKa = 3.14EE272 pKa = 4.18HH273 pKa = 7.42QVALRR278 pKa = 11.84KK279 pKa = 9.17FADD282 pKa = 3.64EE283 pKa = 5.12RR284 pKa = 11.84IHH286 pKa = 6.66FLDD289 pKa = 6.09GIGEE293 pKa = 4.17PKK295 pKa = 10.29KK296 pKa = 10.81AGTFRR301 pKa = 11.84SLLAVLGVEE310 pKa = 4.99PSAQTTTHH318 pKa = 5.1TEE320 pKa = 3.69EE321 pKa = 5.61RR322 pKa = 11.84NDD324 pKa = 3.55EE325 pKa = 4.29DD326 pKa = 5.44DD327 pKa = 4.46SGGEE331 pKa = 3.8SDD333 pKa = 3.7VARR336 pKa = 11.84GEE338 pKa = 4.16EE339 pKa = 4.32PEE341 pKa = 4.34PEE343 pKa = 4.38AGGGTSRR350 pKa = 11.84PGASGRR356 pKa = 11.84GAGRR360 pKa = 11.84GKK362 pKa = 10.95GNARR366 pKa = 11.84LSRR369 pKa = 11.84NVEE372 pKa = 3.43VSAQVRR378 pKa = 11.84LGEE381 pKa = 4.01LQTYY385 pKa = 8.15RR386 pKa = 11.84FRR388 pKa = 11.84VHH390 pKa = 7.71RR391 pKa = 11.84EE392 pKa = 3.76MVEE395 pKa = 3.62HH396 pKa = 6.74RR397 pKa = 11.84VRR399 pKa = 11.84SIAVARR405 pKa = 11.84SRR407 pKa = 11.84FEE409 pKa = 3.66AGIRR413 pKa = 11.84RR414 pKa = 11.84IIGGGEE420 pKa = 3.64MRR422 pKa = 11.84SWYY425 pKa = 9.02TDD427 pKa = 2.35SRR429 pKa = 11.84MYY431 pKa = 10.69RR432 pKa = 11.84GGGNSNDD439 pKa = 3.26AMKK442 pKa = 10.46LLSAASVVTPGKK454 pKa = 10.44FLDD457 pKa = 3.1QCYY460 pKa = 9.29RR461 pKa = 11.84VSSARR466 pKa = 11.84KK467 pKa = 9.09ALRR470 pKa = 11.84LPSGLRR476 pKa = 11.84VPDD479 pKa = 3.96SLAEE483 pKa = 4.24CQCKK487 pKa = 8.36TFNDD491 pKa = 3.69QASAGPFLRR500 pKa = 11.84AFGIKK505 pKa = 9.53KK506 pKa = 10.18KK507 pKa = 10.4YY508 pKa = 9.44GLRR511 pKa = 11.84RR512 pKa = 11.84MLEE515 pKa = 3.73EE516 pKa = 4.28FMWGIYY522 pKa = 9.83DD523 pKa = 3.73RR524 pKa = 11.84YY525 pKa = 10.54GDD527 pKa = 3.54GRR529 pKa = 11.84GDD531 pKa = 3.49EE532 pKa = 4.19RR533 pKa = 11.84SLPFITGRR541 pKa = 11.84IGFRR545 pKa = 11.84TKK547 pKa = 10.67LLEE550 pKa = 4.26EE551 pKa = 4.75GEE553 pKa = 4.39ALRR556 pKa = 11.84KK557 pKa = 8.94IRR559 pKa = 11.84NGEE562 pKa = 3.83PLGRR566 pKa = 11.84AVMMLDD572 pKa = 3.21ALEE575 pKa = 4.77QISSSPLYY583 pKa = 10.49NILSGYY589 pKa = 9.64CGRR592 pKa = 11.84NRR594 pKa = 11.84NKK596 pKa = 9.97GWCEE600 pKa = 3.55FRR602 pKa = 11.84NTTVRR607 pKa = 11.84ASSDD611 pKa = 2.72WGLLYY616 pKa = 10.9SEE618 pKa = 4.79VEE620 pKa = 3.84RR621 pKa = 11.84AKK623 pKa = 10.95CIVEE627 pKa = 4.21LDD629 pKa = 3.0WSKK632 pKa = 10.98FDD634 pKa = 3.92RR635 pKa = 11.84EE636 pKa = 4.15RR637 pKa = 11.84PSRR640 pKa = 11.84DD641 pKa = 2.65ILFVIKK647 pKa = 10.31VIISCFEE654 pKa = 3.81PRR656 pKa = 11.84NGRR659 pKa = 11.84EE660 pKa = 3.61RR661 pKa = 11.84RR662 pKa = 11.84LLEE665 pKa = 4.13AYY667 pKa = 10.01EE668 pKa = 4.08IMLEE672 pKa = 3.9RR673 pKa = 11.84ALVHH677 pKa = 7.07RR678 pKa = 11.84LLLTDD683 pKa = 3.78AGGVLEE689 pKa = 4.47MEE691 pKa = 4.59GMVPSGSLWTGWLDD705 pKa = 3.23TAMNILYY712 pKa = 9.79IRR714 pKa = 11.84AACLGAGIASDD725 pKa = 4.99LYY727 pKa = 11.14SSRR730 pKa = 11.84CAGDD734 pKa = 4.48DD735 pKa = 3.47NLTLFWEE742 pKa = 4.63DD743 pKa = 3.25QSDD746 pKa = 4.52GILGLVKK753 pKa = 10.19QHH755 pKa = 6.07LNNWFRR761 pKa = 11.84AGIKK765 pKa = 10.55DD766 pKa = 3.61EE767 pKa = 5.05DD768 pKa = 4.61FIICRR773 pKa = 11.84GPYY776 pKa = 9.02YY777 pKa = 10.15VEE779 pKa = 5.41RR780 pKa = 11.84YY781 pKa = 8.48QATFPIGTDD790 pKa = 3.26LSEE793 pKa = 4.36GTSRR797 pKa = 11.84LMDD800 pKa = 3.42SAIWVRR806 pKa = 11.84LEE808 pKa = 3.86GGPIIDD814 pKa = 3.84ANRR817 pKa = 11.84GLSHH821 pKa = 6.37RR822 pKa = 11.84WEE824 pKa = 4.12YY825 pKa = 11.01RR826 pKa = 11.84FHH828 pKa = 7.2GKK830 pKa = 9.25PKK832 pKa = 10.31FLSCYY837 pKa = 8.02WLPDD841 pKa = 3.23GRR843 pKa = 11.84PIRR846 pKa = 11.84PAHH849 pKa = 6.66DD850 pKa = 3.97CLEE853 pKa = 4.17KK854 pKa = 11.01LLWPEE859 pKa = 5.03GIHH862 pKa = 7.16GDD864 pKa = 3.83LEE866 pKa = 4.49TYY868 pKa = 8.56EE869 pKa = 4.24AAVISMIVDD878 pKa = 3.26NPFNHH883 pKa = 6.73HH884 pKa = 6.14NVNHH888 pKa = 5.58MLVRR892 pKa = 11.84YY893 pKa = 9.31VLIQQIKK900 pKa = 7.99RR901 pKa = 11.84QVVSPMTAEE910 pKa = 4.87DD911 pKa = 3.38IVYY914 pKa = 9.97LCKK917 pKa = 10.52FRR919 pKa = 11.84DD920 pKa = 3.69RR921 pKa = 11.84EE922 pKa = 4.45GGSVPYY928 pKa = 10.42PMIGPWRR935 pKa = 11.84RR936 pKa = 11.84GQKK939 pKa = 8.65QGRR942 pKa = 11.84MEE944 pKa = 5.31DD945 pKa = 3.81YY946 pKa = 10.69PEE948 pKa = 3.94VGRR951 pKa = 11.84DD952 pKa = 3.03IKK954 pKa = 10.92NLKK957 pKa = 10.06GFVAGISTLYY967 pKa = 9.94ARR969 pKa = 11.84KK970 pKa = 10.09GGGGIDD976 pKa = 2.85AWRR979 pKa = 11.84FMDD982 pKa = 5.64IIRR985 pKa = 11.84GDD987 pKa = 3.45ADD989 pKa = 3.81LGQGQFGNEE998 pKa = 3.74VLEE1001 pKa = 4.09WARR1004 pKa = 11.84WLGRR1008 pKa = 11.84HH1009 pKa = 5.47EE1010 pKa = 4.1VTKK1013 pKa = 10.05FLRR1016 pKa = 11.84PIKK1019 pKa = 10.24RR1020 pKa = 11.84MRR1022 pKa = 11.84AEE1024 pKa = 3.95HH1025 pKa = 6.55GEE1027 pKa = 4.13VIIEE1031 pKa = 4.19GEE1033 pKa = 4.17GRR1035 pKa = 11.84RR1036 pKa = 11.84QAEE1039 pKa = 3.75AALRR1043 pKa = 11.84ALRR1046 pKa = 11.84EE1047 pKa = 3.86ILNEE1051 pKa = 3.96GTHH1054 pKa = 6.65RR1055 pKa = 11.84SCLDD1059 pKa = 3.13FSFFLSDD1066 pKa = 3.84RR1067 pKa = 11.84LRR1069 pKa = 11.84ASCEE1073 pKa = 3.71DD1074 pKa = 3.41PRR1076 pKa = 11.84RR1077 pKa = 3.67

Molecular weight:
121.31 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1481

404

1077

740.5

82.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.386 ± 1.094

1.418 ± 0.329

5.672 ± 0.01

8.845 ± 0.514

3.781 ± 0.154

9.588 ± 0.032

1.553 ± 0.153

5.064 ± 0.657

4.727 ± 0.591

7.833 ± 0.92

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.161 ± 0.329

2.498 ± 0.372

4.591 ± 0.415

3.309 ± 0.438

10.128 ± 0.231

4.794 ± 0.406

4.456 ± 0.722

6.347 ± 0.645

1.688 ± 0.34

2.161 ± 0.569

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski