Legionella drancourtii LLAP12

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella drancourtii

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3959 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9EKE5|G9EKE5_9GAMM Uncharacterized protein OS=Legionella drancourtii LLAP12 OX=658187 GN=LDG_5674 PE=4 SV=1
MM1 pKa = 7.79IFDD4 pKa = 4.0TGISGLQAASNNLDD18 pKa = 3.54VIGNNIANSSTVGFKK33 pKa = 10.62GSRR36 pKa = 11.84ANFGDD41 pKa = 3.54IYY43 pKa = 11.24SFGGYY48 pKa = 9.26GSSGTTPGGGVMLTSIQQSFASGTMTSTNNTLDD81 pKa = 3.75LAISGNGFFILNNQGATSYY100 pKa = 11.16SRR102 pKa = 11.84AGQFTLNNDD111 pKa = 3.28NYY113 pKa = 8.85ITNSSGQFLTGYY125 pKa = 10.04LADD128 pKa = 3.72AAGNITGASGNIQVNMANLSPKK150 pKa = 9.51ATTLVSTGLNLNSQSKK166 pKa = 9.89PPAADD171 pKa = 2.98WSGGAAPVTDD181 pKa = 4.44TYY183 pKa = 11.95NNTTSMTIYY192 pKa = 10.67DD193 pKa = 4.08SLGNSHH199 pKa = 6.36VLSMYY204 pKa = 10.67FIMADD209 pKa = 3.28STATAGQPDD218 pKa = 3.81AASPVGQTNQWYY230 pKa = 9.58VAFQIDD236 pKa = 4.0NQDD239 pKa = 3.07VPSIVTPGNSSNLFAANFNSDD260 pKa = 3.25GTFTSVQDD268 pKa = 3.75TTGTAIPTNLIPLSYY283 pKa = 10.3TLTNGANPLSLSIDD297 pKa = 3.64LSSCTQFGSPFAVQSANASGYY318 pKa = 5.85TTGSLAGLQVDD329 pKa = 3.83AAGVISGSYY338 pKa = 11.07SNGQTLAMGQIQLANFADD356 pKa = 4.56LNGLQNIGNVCWTATATSGQALIGTGGTGSFGTLLSGRR394 pKa = 11.84LEE396 pKa = 4.06EE397 pKa = 4.6SNVDD401 pKa = 3.15ITSEE405 pKa = 3.99LVDD408 pKa = 5.26LIGAQRR414 pKa = 11.84DD415 pKa = 3.97FQANAQTIRR424 pKa = 11.84AGDD427 pKa = 4.22TITQTIINIRR437 pKa = 3.51

Molecular weight: 44.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9EK50|G9EK50_9GAMM Histidine biosynthesis bifunctional protein HisIE OS=Legionella drancourtii LLAP12 OX=658187 GN=hisI PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.18RR12 pKa = 11.84KK13 pKa = 8.79RR14 pKa = 11.84DD15 pKa = 3.31HH16 pKa = 6.72GFRR19 pKa = 11.84EE20 pKa = 4.28RR21 pKa = 11.84MATRR25 pKa = 11.84AGRR28 pKa = 11.84LVIKK32 pKa = 10.41RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.84GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3959

0

3959

1146871

37

4687

289.7

32.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.026 ± 0.042

1.183 ± 0.013

4.802 ± 0.029

5.916 ± 0.043

4.396 ± 0.028

5.853 ± 0.045

2.598 ± 0.019

7.303 ± 0.038

6.256 ± 0.046

10.969 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.439 ± 0.022

4.986 ± 0.031

4.028 ± 0.024

4.769 ± 0.039

4.196 ± 0.029

6.438 ± 0.03

5.393 ± 0.032

5.897 ± 0.036

1.12 ± 0.014

3.432 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski